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HorvathLab
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NGS
Next-Gen Sequencing tools from the Horvath Lab
https://horvathlab.github.io/NGS/
MIT License
39
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16
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ZL request
#47
smartinezzz
closed
1 month ago
0
MB figure requests
#46
smartinezzz
opened
2 months ago
5
ML project ideas for long reads
#45
smartinezzz
opened
2 months ago
0
Express the ML SNV model using the log-ratio and MAF formula
#44
smartinezzz
opened
2 months ago
0
ML SNVs - log-ratio and MAF formula
#43
smartinezzz
opened
2 months ago
0
code review with Joe
#42
AneliaHorvath
closed
2 months ago
1
run the Model on the Nanopore output (from Vania), 1 sample
#41
AneliaHorvath
closed
2 months ago
1
Run the best ML model on DNA (germline+somatic) vs RNA
#40
AneliaHorvath
closed
2 months ago
1
Run the best ML model on the 28 samples separately
#39
AneliaHorvath
closed
2 months ago
1
Tushar2016sharma patch 1
#38
tushar2016sharma
closed
3 months ago
0
Add files via upload
#37
tushar2016sharma
closed
3 months ago
0
Implement transformer
#36
smartinezzz
closed
1 month ago
0
class imbalance penalization
#35
smartinezzz
opened
5 months ago
0
Get Tushar MGPC access
#34
smartinezzz
closed
4 months ago
0
Run all samples together
#33
smartinezzz
closed
1 month ago
0
LongReads_PacBio
#32
AneliaHorvath
opened
5 months ago
0
LongReads_Nanopore
#31
AneliaHorvath
opened
5 months ago
0
Reanalyze 10 scRNA-seq data to add to the 28 samples
#30
AneliaHorvath
closed
1 month ago
0
CNVs_CopyKat for ML
#29
AneliaHorvath
closed
1 month ago
1
WES_KyleandChiara
#28
AneliaHorvath
opened
5 months ago
0
scSNViz_1web
#27
AneliaHorvath
closed
3 months ago
1
Mut_Signatures_4ML
#26
AneliaHorvath
closed
1 month ago
0
IGV_145 sceSNV from scVARloci
#25
AneliaHorvath
closed
5 months ago
0
28 sets Run for N_VAR and N_REF
#24
AneliaHorvath
closed
3 months ago
1
LabTasks
#23
AneliaHorvath
opened
5 months ago
0
convert snv files into matrix form
#22
smartinezzz
closed
3 months ago
0
Add sample files via upload
#21
smartinezzz
closed
5 months ago
0
Clarification on Workflow for SCReadCounts Application
#20
Giovanna0806
opened
6 months ago
0
Allele-Specific Expression (ASE) from scRNA-seq dataset
#19
singcell
opened
6 months ago
4
SCExecute's Capability to Split Pooled BAM Files into Single-Cell BAMs
#18
Giovanna0806
closed
6 months ago
4
Screadcounts output file
#17
juniajvs
closed
7 months ago
7
scVarLoci from cellranger 7.10
#16
gabrielascui
closed
1 year ago
8
SCReadCounts only using one core
#15
Ilarius
closed
11 months ago
5
AssertionError
#14
Ilarius
closed
1 year ago
2
Usage of scReadCounts for single nucleotide variant calling from 10X scRNAseq data of haploid genomes
#13
JesseRop
closed
11 months ago
2
Problem when .gz output file is present with the same name
#12
nigiord
closed
1 year ago
7
Fixed a typo in short_list.txt from A to ALT.
#11
akim135
closed
1 year ago
0
New version of scSNVis
#10
akim135
closed
1 year ago
0
CR:Z tag in the bam file
#9
eltonjrv
closed
2 years ago
7
usage of table_browser_to_SCRC.py
#8
rosaranli
closed
2 years ago
11
scReadCounts - Filter parameters?
#7
Romeo1-1
closed
2 years ago
4
scReadCounts with strand information
#6
lucia-ramirez
closed
2 years ago
2
Some confusions about scReadCount
#5
XUEbaogai0101
closed
2 years ago
2
empty results from scReadCounts
#4
rosaranli
closed
2 years ago
8
readCounts -G
#3
lucia-ramirez
closed
3 years ago
7
Install scReadCounts
#2
lucia-ramirez
closed
3 years ago
2
scReadCount: -G option
#1
vbruat
closed
3 years ago
4