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HumanCellAtlas
/
data-consumer-vignettes
Simple walk-throughs of interacting with the DCP as a downstream data consumer.
MIT License
17
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5
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Update/copyedit notebooks (Add Sphinx docs - Part 4)
#100
chmreid
closed
4 years ago
2
Add ability to launch each vignette notebook on MyBinder.org
#99
chmreid
opened
4 years ago
1
Add Sphinx Makefile and pin Sphinx version in requirements-docs.txt
#98
chmreid
opened
4 years ago
0
Add Makefile and config file for Sphinx, nbsphinx (Add Sphinx docs - Part 3)
#97
chmreid
closed
3 years ago
3
Convert SPARK example from Markdown to Jupyter notebook
#96
chmreid
opened
4 years ago
0
Use cell-by-gene matrix files, not metadata, to count cells of a given type
#95
chmreid
opened
4 years ago
1
Copyedit notebooks to improve explanations and be more formal/less colloquial
#94
chmreid
opened
4 years ago
0
Fix multiple issues with notebooks completing execution
#93
chmreid
opened
4 years ago
0
Fix notebooks to pass tests (Add Sphinx docs - Part 2)
#92
chmreid
closed
3 years ago
1
Notebook tests are hanging
#91
chmreid
opened
4 years ago
1
[DO NOT MERGE] Raise an exception to test notebook tests
#90
chmreid
closed
4 years ago
2
Inconsistencies in notebook test behavior
#89
chmreid
closed
4 years ago
3
Test against Python 3.8
#88
natanlao
opened
4 years ago
0
Rename notebook folders to have no spaces (Add Sphinx docs - Part 1)
#87
chmreid
closed
3 years ago
1
Fix directory and notebook names to eliminate spaces
#86
chmreid
opened
4 years ago
0
[EASY] Fix notebook path argument in scanpy readme
#85
chmreid
closed
4 years ago
0
Bump SPARK version to latest in pom.xml
#84
chmreid
closed
4 years ago
0
[EASY] Bump spark version: 2.3.3 -> 2.4.4
#83
chmreid
closed
4 years ago
3
Issue with --notebook-dir argument in Scanpy vignette
#82
chmreid
closed
4 years ago
0
Remediate High Zookeeper vulnerability
#81
Lilalamar
closed
4 years ago
2
Remediate High Netty vulnerability
#80
Lilalamar
closed
4 years ago
3
Remediate High Protobuf vulnerability
#79
Lilalamar
closed
4 years ago
1
Scanpy demo fais: AttributeError: module 'igraph' has no attribute 'Graph'
#78
chmreid
closed
4 years ago
1
General test harness improvements
#77
natanlao
closed
4 years ago
5
[EPIC] Use nbsphinx to integrate Jupyter notebooks with Sphinx documentation
#76
chmreid
opened
4 years ago
0
Missing quickstart instructions
#75
chmreid
opened
4 years ago
0
[DO NOT MERGE] Raise an error from a notebook to test CI/CD checks
#74
chmreid
closed
4 years ago
3
Convert link to <pre> text in scanpy readme
#72
chmreid
closed
5 years ago
0
Fix Travis builds being shown as passing when they are actually failing
#71
natanlao
closed
5 years ago
0
Update Matrix Service URL in HCA Scanpy Demo - May 2019
#70
amarjandu
closed
5 years ago
3
Fix bug in TOC generation script
#69
chmreid
closed
5 years ago
0
ElasticSearch fields are opaque to consumers
#68
natanlao
opened
5 years ago
1
Get analysis bundles from prod (closes #20)
#67
natanlao
closed
5 years ago
1
CI/CD failure notification pipeline
#66
natanlao
closed
4 years ago
5
Add README to fastq download notebook (closes #44)
#65
natanlao
closed
5 years ago
0
Jeff fix links
#64
jeffrey856
closed
5 years ago
0
Fixed README
#63
jeffrey856
closed
5 years ago
1
Update spark-core version (closes #60)
#62
natanlao
closed
5 years ago
0
[SPIKE] Review Fusillade Deployment
#61
kozbo
closed
5 years ago
1
Remediate High Spark vulnerability
#60
stahiri
closed
5 years ago
0
Notebooks need consistent dependency install process
#59
natanlao
opened
5 years ago
2
Add fastq download notebook
#58
natanlao
closed
5 years ago
2
Link from May 2019 scanpy demo to old Nov 2018 scanpy demo is broken
#57
chmreid
closed
5 years ago
0
Links in Readme are broken
#56
chmreid
closed
5 years ago
3
Add note on requirements (closes #22)
#54
natanlao
closed
5 years ago
0
Created Script to Gen ToC
#53
jeffrey856
closed
5 years ago
2
Created Contributing.md
#52
jeffrey856
closed
5 years ago
0
Flatten repository hierarchy
#51
natanlao
closed
5 years ago
0
removed warnings
#50
jeffrey856
closed
5 years ago
1
Create a contributing.md file for this repo
#49
kozbo
closed
5 years ago
0
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