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HumanCellAtlas
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skylab
Soon to be deprecated in favor of broadinstitute/warp github repo. Previously: Secondary analysis pipelines
BSD 3-Clause "New" or "Revised" License
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Lk ss2 maintenance
#323
ekiernan
closed
4 years ago
0
add metadata feature to zarr
#322
khajoue2
closed
4 years ago
0
add optimus 4kpbmc snRNA test
#321
barkasn
closed
4 years ago
0
Lk optimus diagram
#320
ekiernan
closed
4 years ago
1
PR to ensure portability test are no longer running
#319
jessicaway
closed
4 years ago
0
disable portability tests
#318
barkasn
closed
4 years ago
0
Add if branch for snRNA-seq different tagging of BAM
#317
barkasn
closed
4 years ago
0
Add Exon and Intron Counting Task from new dropseqtools version
#316
barkasn
closed
4 years ago
0
fix memory for hisat2
#315
barkasn
closed
4 years ago
0
Update Optimus.changelog.md
#314
barkasn
closed
4 years ago
0
update readme and changelog
#313
barkasn
closed
4 years ago
1
Update README.md
#312
ekiernan
closed
4 years ago
0
add forgotten pbmc test fix
#311
barkasn
closed
4 years ago
0
Move Optimus and SS2 to WDL 1.0
#310
barkasn
closed
4 years ago
0
create wdl1.0 branch
#309
barkasn
closed
4 years ago
0
Running Optimus on Read1 with length greater than 26 base pairs
#308
jychien
closed
4 years ago
1
Bump dependencies for vulnerabilities
#307
Fab-T
closed
4 years ago
2
Update Optimus to OpenWDL version 1.0 Syntax
#306
yihming
closed
4 years ago
9
remove circle ci successes from requirements
#305
jessicaway
closed
4 years ago
0
Fix emptydrops Bug
#304
barkasn
closed
4 years ago
0
Fix the bug in emptydropswrapper script.
#303
rexwangcc
closed
4 years ago
0
emptyDropsWrapper.R bug
#302
edenisen
closed
4 years ago
2
Lk optimus readme metrics
#301
ekiernan
closed
4 years ago
0
snRNA-seq functionality in Optimus
#300
barkasn
closed
4 years ago
0
Optimus snRNA-seq [DO NOT MERGE]
#299
barkasn
closed
4 years ago
0
reduce memory requirement
#298
YOU-k
closed
4 years ago
1
remove stray file
#297
barkasn
closed
4 years ago
0
Lk ss2 single changelog
#296
ekiernan
closed
4 years ago
0
Lk smartseq2 multisample readme
#295
ekiernan
closed
4 years ago
1
Version changes in docs
#294
barkasn
closed
4 years ago
0
Lk ss2 multi changelog
#293
ekiernan
closed
4 years ago
0
update ss2 pipeline version
#292
barkasn
closed
4 years ago
0
Lk smartseq2 readme
#291
ekiernan
closed
4 years ago
0
SS2 multisample test by delta on loom
#290
barkasn
closed
4 years ago
0
Delete PublicDocumentation.md
#289
ekiernan
closed
4 years ago
0
Add Loom output to plate based SS2
#288
barkasn
closed
4 years ago
0
delete ss2 unpaired pipeline
#287
barkasn
closed
4 years ago
0
Can't access /usr/picard/picard.jar when using singularity
#286
evan-wehi
closed
4 years ago
1
Can't access /usr/picard/picard.jar when using singularity
#285
evanthomas
closed
4 years ago
0
Add plate-based SS2 pipeline
#284
barkasn
closed
4 years ago
0
kmk-ss2-pe-se
#283
barkasn
closed
4 years ago
1
Update README.md
#282
ekiernan
closed
4 years ago
0
Add new release to Optimus readme
#281
kbergin
closed
4 years ago
0
Lk optimus changelog
#280
ekiernan
closed
5 years ago
0
Streamlining the implementation, updating, and (re-)running of pipelines in multiple centers
#279
LisaSikkema
closed
4 years ago
4
Prepare for 1.4.0 release
#278
barkasn
closed
5 years ago
0
Lk readme bamtags
#277
ekiernan
closed
5 years ago
0
fix matrix_format_spec 40->80
#276
barkasn
closed
5 years ago
1
Can not find make_grch38_snp_tran_gencode.sh script?
#275
tianxiahuihui
closed
4 years ago
1
Optimus loom
#274
ekiernan
closed
5 years ago
0
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