COSgen

.. image:: https://readthedocs.org/projects/cosgen/badge/?version=latest :target: http://cosgen.readthedocs.io/en/latest/?badge=latest :alt: Documentation Status .. image:: https://travis-ci.org/IBT-FMI/COSgen.svg?branch=master :target: https://travis-ci.org/IBT-FMI/COSgen

COSgen (Contrast optimized stimulus generator) is a Python package for the optimization of stimulus sequences in stimulus evoked fMRI experiments. It is fully compatible with the stimulus sequence delivery solution COSplay_.

Features

• Highly adaptable for specific use cases
• Allows full model (design matrix construction, convarinace matrix compution) specification
• Allows custom fitness measure specification
• Extensive API Documentation_
• Fully compatible with a pure Micro/Python stimulus delivery solution (COSplay_)

Installation

COSgen can be installed using Python's setuptools.

.. code-block:: console

git clone https://github.com/IBT-FMI/COSgen.git cd COSgen python setup.py install --user

Note: setuptools will not manage any dependencies. You will have to install Dependencies_ manually, e.g. using pip install argh.

Dependencies

• Python_ 2.7 or Python 3.5 and newer
• Numpy_ 1.13 or newer
• Scipy_ 0.19 or newer
• Argh_ 0.26 or newer

.. _Python: https://www.python.org/ .. _COSplay: https://github.com/IBT-FMI/COSplay .. _Documentation: http://cosgen.readthedocs.io/en/latest/ .. _Numpy: http://www.numpy.org/ .. _Scipy: https://www.scipy.org/ .. _Argh: https://pypi.python.org/pypi/argh