Release 0.12.10

[yannikschaelte]

General:

• Update to Python 3.11, drop Python 3.8 support
• Turn simple files into submodules for cleaner import
• Fix dask sampler (change default pickling and use global function that it can pickle)

Documentation:

• Configure readthedocs build environment
• Refactor API docs (add [+]; easier navigation)
• Correct scipy intersphinx link
• Add docstrings to submodules

Minor fixes:

• Flake8 fixes of dict creation from key+value
• Fix imports from correct submodule in external submodule
• Fix package versions in migration test

Visualization:

• Contour plots as a direct alternative to kernel density heat maps and histograms (#597)
• Fix column renaming in visserver

[codecov-commenter]

Codecov Report

Merging #598 (99c0b86) into main (7d9c109) will decrease coverage by 0.11%. The diff coverage is 96.66%.

:mega: This organization is not using Codecov’s GitHub App Integration. We recommend you install it so Codecov can continue to function properly for your repositories. Learn more

@@            Coverage Diff             @@
##             main     #598      +/-   ##
==========================================
- Coverage   86.85%   86.75%   -0.11%     
==========================================
  Files         129      139      +10     
  Lines        7852     7941      +89     
==========================================
+ Hits         6820     6889      +69     
- Misses       1032     1052      +20     

Impacted Files	Coverage Δ
pyabc/__init__.py	100.00% <ø> (ø)
pyabc/distance/pnorm.py	85.97% <ø> (ø)
pyabc/external/__init__.py	100.00% <ø> (ø)
pyabc/external/julia/__init__.py	100.00% <ø> (ø)
pyabc/external/r/__init__.py	100.00% <ø> (ø)
pyabc/parameters/parameters.py	84.21% <ø> (ø)
pyabc/petab/amici.py	81.48% <0.00%> (ø)
pyabc/random_choice/random_choice.py	100.00% <ø> (ø)
pyabc/sampler/__init__.py	100.00% <ø> (ø)
pyabc/sampler/dask_sampler.py	83.33% <ø> (-16.67%)	:arrow_down:
... and 32 more

... and 2 files with indirect coverage changes