prepare release v0.5.0

[PaulJonasJost]

Best look at #1342 to check whether everything is included.

• General
  • Include pymc in the documentation. (#1305)
  • Ruff Codechecks (#1307)
  • Support RoadRunner as simulator for PEtab problems (#1336, #1347)
• Hierarchical
  • Semiquant: Fix spline knot initialization (#1313, #1323)
  • Semiquant: Add spline knots to the optimization result (#1314)
  • Semiquant: fix inner opt tolerance (#1330)
  • Relative: Fix return of relative calculator if sim fails (#1315)
  • Relative: Hierarchical optimization: fix unnecessary simulation (#1327)
  • Relative: Fix return of inner parameters on objective call (#1333)
• Optimize
  • Support ipopt with gradient approximation (#1310)
  • Deprecate CmaesOptimizer in favor of CmaOptimizer (#1311)
  • ESSOptimizer: Respect local_n2 in case of failed initial local search (#1328)
  • Remove CESSOptimizer (#1320)
  • SacessOptimizer: use 'spawn' start method for multiprocessing (#1353)
• PEtab
  • Fix unwanted amici model recompilation in PEtab importer (#1319)
• Sample
  • Adding Thermodynamic Integration (#1326, #1361)
  • Dynesty warnings added (#1324)
  • Dynesty: method to save raw results (#1331)
• Ensembles
  • Ensembles: don't expect OptimizerResult.id to be convertible to int (#1351)
• Misc
  • Updated Code to match dependency updates (#1316, #1344, #1346, #1345)
  • Ignore code formatting in git blame (#1317)
  • Updated deployment method (#1341)
  • add pyupgrade to codechecks (#1352)
  • Temporarily require scipy<1.13.0 for pypesto[pymc] (#1360)

[codecov-commenter]

Codecov Report

All modified and coverable lines are covered by tests :white_check_mark:

Project coverage is 84.38%. Comparing base (0830e95) to head (c823b67).

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Additional details and impacted files

```diff @@ Coverage Diff @@ ## develop #1366 +/- ## =========================================== - Coverage 84.45% 84.38% -0.08% =========================================== Files 157 157 Lines 12914 12914 =========================================== - Hits 10907 10897 -10 - Misses 2007 2017 +10 ```

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[FFroehlich]

would be nice to have #1346 in the next release :)

[PaulJonasJost]

would be nice to have #1346 in the next release :)

@FFroehlich, it is in there (Misc first point), but can move it to an explicit bulletpoint :)

[FFroehlich]

would be nice to have #1346 in the next release :)

@FFroehlich, it is in there (Misc first point), but can move it to an explicit bulletpoint :)

ah, sorry missed that :)