Command-line interface?

ICB-DCM / pyPESTO

python Parameter EStimation TOolbox

https://pypesto.readthedocs.io

BSD 3-Clause "New" or "Revised" License

211 stars 47 forks source link

Command-line interface? #449

Open dweindl opened 3 years ago

dweindl commented 3 years ago

Have there been any plans for a command-line interface for pypesto, e.g. pypesto-optimize --problem=petab:problem.yaml --config=optimization_options.yaml --output=hdf5:results.h5? I'd find that convenient... Any opinions?

Would require #117 to be implemented first.

yannikschaelte commented 3 years ago

No, but good idea. This would require all pypesto input options to be defined/definable in e.g. yaml files. Including the optimizer, optimizer options, global optimization options, sampler, problem bounds, ...

FFroehlich commented 3 years ago

No, but good idea. This would require all pypesto input options to be defined/definable in e.g. yaml files. Including the optimizer, optimizer options, global optimization options, sampler, problem bounds, ...

would be nice anyways!