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Redo how we align epitopes with no exact match
#47
danielmarrama
opened
2 days ago
0
Break down polyprotein "fragments" into names of proteins
#46
danielmarrama
opened
2 days ago
0
Fix overlapping fragments
#45
danielmarrama
opened
2 days ago
0
ImmunomeBrowser x-axis
#44
jasonzhyan
closed
3 weeks ago
3
Protein tree selection
#43
Marcus-Mendes
closed
3 weeks ago
3
protein tree testing: issue with expand/collapse of 'homo sapiens' node
#42
jgbaum
closed
2 weeks ago
3
protein tree testing: potentially unnecessary 'other' category under 'vertebrate'
#41
jgbaum
opened
1 month ago
0
protein tree testing: inconsistent polyprotein annotations
#40
jgbaum
closed
2 days ago
1
protein tree testing: 'other virus' category
#39
jgbaum
opened
1 month ago
1
protein tree testing: Archaea potentially mislabeled
#38
jgbaum
opened
1 month ago
1
protein tree testing: mixed plurality used in labels at the high level
#37
jgbaum
opened
1 month ago
0
Add allergen table to Nanobot configs
#36
jamesaoverton
opened
4 months ago
0
nan entries in test build
#35
danielmarrama
closed
3 months ago
1
Fragments aren't properly splitting on the test build site
#34
danielmarrama
closed
3 months ago
0
Add MHC nodes to protein tree
#33
danielmarrama
closed
3 months ago
0
Add MRO
#32
jamesaoverton
closed
5 months ago
0
Improve serve: relative links, port option
#31
jamesaoverton
closed
5 months ago
0
SRCs not being assigned properly
#30
danielmarrama
closed
5 months ago
0
peptide.sql should include region on multi-chain proteins and spliced peptides
#29
danielmarrama
opened
5 months ago
0
Skip old sources and peptides each build unless the proteome has changed
#28
danielmarrama
opened
5 months ago
0
Add annotations to protein_tree tables for the molecule finder
#27
danielmarrama
closed
5 months ago
0
Missing species in the old protein tree test build
#26
danielmarrama
closed
5 months ago
3
add protein fragments to protein tree
#25
danielmarrama
closed
5 months ago
1
generate Leidos tables
#24
danielmarrama
closed
5 months ago
0
More fixes for Leidos
#23
jamesaoverton
closed
5 months ago
0
Fix problem with strains in current protein tree
#22
jamesaoverton
closed
6 months ago
2
Add MRO nodes to protein tree
#21
jamesaoverton
opened
6 months ago
0
Add gene names to OwlImporterV2 search tables
#20
jamesaoverton
opened
6 months ago
0
Add genes nodes to protein tree
#19
jamesaoverton
opened
6 months ago
0
Ensure non-peptides appear in Molecule Finder
#18
jamesaoverton
closed
6 months ago
1
Fix Nanobot to display large numbers of siblings in the tree
#17
jamesaoverton
opened
6 months ago
0
Add immunoglobulin nodes to protein tree
#16
jamesaoverton
closed
5 months ago
0
Fixes for Leidos
#15
jamesaoverton
closed
6 months ago
0
Develop workflow for reviewing and updating NCBI Taxonomy
#14
jamesaoverton
opened
6 months ago
0
group source antigens that do not match into "other" nodes per species
#13
danielmarrama
closed
5 months ago
1
Add protein fragments to protein tree
#12
jamesaoverton
closed
5 months ago
1
Generate Leidos-specific files
#11
jamesaoverton
closed
5 months ago
5
generate epitope_mappings.tsv and epitope_mappings_new.tsv for Leidos
#10
danielmarrama
closed
6 months ago
0
Build molecule-tree
#9
jamesaoverton
closed
6 months ago
3
Fix indentation in assign.py
#8
jamesaoverton
closed
6 months ago
0
Fix tables, add disease-tree, molecule-tree
#7
jamesaoverton
closed
6 months ago
1
add additional columns for source table sql query
#6
danielmarrama
closed
7 months ago
0
add epitope id for sql pull
#5
danielmarrama
closed
7 months ago
0
Peptide and source assignment tables + protein tree viewer in Arborist frontend
#4
danielmarrama
closed
6 months ago
3
replace mysql with mariadb
#3
danielmarrama
closed
8 months ago
0
Maria db replacement
#2
danielmarrama
closed
8 months ago
1
make proteome + make protein
#1
danielmarrama
closed
7 months ago
10