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IHEC
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epiATLAS-metadata-harmonization
IHEC metadata merging and cleanup
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Check the cell_type information with the ontology description term
#42
GFrosi
closed
2 years ago
2
Cell_type - should we fill the blank fields with the ontology description?
#41
GFrosi
closed
2 years ago
1
Missing EpiRRs - should we remove them?
#40
GFrosi
closed
2 years ago
0
Health status column - Resolve the conflicting and redundant information on the health status column?
#39
GFrosi
closed
2 years ago
3
alpha_cell and beta_cell are inconsistent and have no cell ontology label
#38
SchulzLab
closed
2 years ago
1
Fill blanks in sample ontology term according to IHEC Metadata Specification (version 2.0)
#37
quirinmanz
closed
2 years ago
1
Clean sample ontology term according to IHEC Metadata Specification (version 2.0)
#36
quirinmanz
closed
2 years ago
0
tissue type bone marrow? needs to be resolved
#35
SchulzLab
closed
2 years ago
1
EpiRR entries missing from Metadata table
#34
SchulzLab
closed
2 years ago
2
update entries
#33
SchulzLab
closed
2 years ago
2
"naive cd4-positive t cell": use CL " naive thymus-derived CD4-positive, alpha-beta T cell"?
#32
quirinmanz
closed
2 years ago
0
"naive cd4-positive t cell":
#31
quirinmanz
closed
2 years ago
1
"cd4-positive regulatory t cell": use CL "CD4-positive, CD25-positive, alpha-beta regulatory T cell"?
#30
quirinmanz
closed
2 years ago
1
"endometrial_epithelium_follicular_phase": missing CL
#29
quirinmanz
closed
2 years ago
2
"blastocyst": missing CL
#28
quirinmanz
closed
2 years ago
2
"cord blood": use CL "blood cell"? #25
#27
quirinmanz
closed
2 years ago
2
"cytotrophoblast": use CL "trophoblast cell" or "mononuclear cytotrophoblast cell"
#26
quirinmanz
closed
2 years ago
2
"renal artery endothelial cells": use CL "arcuate artery endothelial cell"?
#25
quirinmanz
closed
2 years ago
2
"carotid artery endothelial cells" and "subclavian artery endothelial cell": use CL "endothelial cell of artery"?
#24
quirinmanz
closed
2 years ago
3
"superior vena cava endothelial cells" and "great saphenous vein endothelial cell": use CL "vein endothelial cell"?
#23
quirinmanz
closed
2 years ago
2
Tissue Type: Capitalize "Brodmann area..." classes?
#22
quirinmanz
closed
3 years ago
1
Tissue Type: "muscle of trunk"
#21
quirinmanz
closed
2 years ago
1
Tissue Type: "lung fibroblast" -> "lung"
#20
quirinmanz
closed
2 years ago
2
Tissue Type: "large intestine-colon-rectosigmoid" ->? "sigmoid colon" or "rectum"
#19
quirinmanz
closed
2 years ago
2
Tissue Type: "germinal matrix" ->? "future brain"
#18
quirinmanz
closed
2 years ago
2
Tissue Type: brodmann (1909) area 8; brodmann (1909) area 9"
#17
quirinmanz
closed
2 years ago
1
Tissue Type: "bone marrow - mononuclear cells"
#16
quirinmanz
closed
2 years ago
1
Tissue Type: "adult human peripheral blood" ->? "blood"
#15
quirinmanz
closed
2 years ago
1
Concerning cell_type: name includes differentiation time
#14
SchulzLab
closed
2 years ago
1
ambiguous naming of b cells
#13
SchulzLab
closed
2 years ago
2
cell origin part of name in cell_type
#12
SchulzLab
closed
2 years ago
0
term neurosphere a cell type?
#11
SchulzLab
closed
2 years ago
1
numbers in cell_type name are non-obvious
#10
SchulzLab
closed
2 years ago
2
Markers column: move information to cell_type column (To Marcel Schulz)
#9
GFrosi
closed
2 years ago
4
Line column: Remove differentiation info
#8
GFrosi
closed
2 years ago
1
Markers column: how to proceed with 'Fraction' information
#7
GFrosi
closed
2 years ago
1
Markers column: how to proceed with 'gate' information in marker description
#6
GFrosi
closed
2 years ago
3
Markers column: rename information by exclusion of details of percentages
#5
GFrosi
closed
2 years ago
2
Markers column: realocation of markers's information to other columns
#4
GFrosi
closed
2 years ago
3
Markers column: link to protocol extraction
#3
GFrosi
closed
2 years ago
12
Test and integrate generate_bigTable.py
#2
sitag
closed
2 years ago
0
Merge columns in IHEC_metadata_summary
#1
sitag
closed
2 years ago
2
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