ihec-assay-standards

This repository is for code and documentation associated with the IHEC Assay Standards working group.

QC Metrics

The documentation and code to compute metrics for all core assays are accessible at:

• Bisulfite-Seq QC metrics
• ChIP-Seq QC metrics
• RNA-Seq QC metrics

IHEC Pipelines

The computational pipeline adopted by IHEC are available via following IHEC repositories:

• Bisulfite-Seq
• ChIP-Seq
• RNA-Seq

Please see the individual pipelines' documentation for releases, workflows and directions on using the pipelines.

Resources

For documentation on references, gene annotations and other resources used by IHEC pipelines, see: resources