Add variant overview plot - Githubissues

IKIM-Essen / uncovar

Transparent and robust SARS-CoV-2 variant calling and lineage assignment with comprehensive reporting.

https://ikim-essen.github.io/uncovar

BSD 2-Clause "Simplified" License

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Add variant overview plot #485

Open thomasbtf opened 2 years ago

thomasbtf commented 2 years ago

Feature Request

Add a plot that contains the following:

The ORFS / genes of the SARS-CoV-2 Genome. See Example [1] below.
The protein products of the SARS-CoV-2 genomes. See Example [1] below.
The amplicon section. See Example [2] below.
The Coverage. See Example [2] below.
Indication of Varaints. See Example [2] below.

Use https://github.com/koesterlab/datavzrd for that. Realise the link to corresponding tables by clicking on the respective variants.

Motivation

Request from Folker

Alternatives

Just including the CoVarPlot #430

Additional context

[1] https://link.springer.com/article/10.1007/s00705-022-05385-y

[2] https://github.com/Psy-Fer/CoVarPlot

thomasbtf commented 2 years ago

Just to check in, could we make any progress with the plot? :)