IKIM-Essen / uncovar

Transparent and robust SARS-CoV-2 variant calling and lineage assignment with comprehensive reporting.
https://ikim-essen.github.io/uncovar
BSD 2-Clause "Simplified" License
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perf: Ont downsampling normalization #489

Closed simakro closed 2 years ago

simakro commented 2 years ago

Description

downsampling and clipping of ONT reads handled by notramp

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thomasbtf commented 2 years ago

Seems like NanoFilt doesn't work: https://github.com/IKIM-Essen/uncovar/runs/5407712905?check_suite_focus=true#step:11:839

thomasbtf commented 2 years ago

There is a new snakemake release: https://github.com/snakemake/snakemake/releases/tag/v7.2.1

Let's hope that fixes the report problem.