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IKIM-Essen / uncovar

Transparent and robust SARS-CoV-2 variant calling and lineage assignment with comprehensive reporting.
https://ikim-essen.github.io/uncovar
BSD 2-Clause "Simplified" License
21 stars 8 forks source link

Primer clipping #502

Closed thomasbtf closed 2 years ago

thomasbtf commented 2 years ago

Version

Bug Report

The primer clipping doesn't seem to work. Can see from 3. Sequencing Details -> 4. Correct Amplicon Primer Clipping.

Minimal Example

See run from 2022-03-18.

Logs

Additional context

2bdec83c22862194c5fcf4bb9197f82719600aea065e2c899f789017fdfb3c4a (1)

alethomas commented 2 years ago
Bildschirmfoto 2022-03-22 um 10 43 16

When using the correct primer file, the primer clipping works properly