IKIM-Essen / uncovar

Transparent and robust SARS-CoV-2 variant calling and lineage assignment with comprehensive reporting.
https://ikim-essen.github.io/uncovar
BSD 2-Clause "Simplified" License
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feat: update snakemake version for resigned workflow #507

Closed thomasbtf closed 7 months ago

thomasbtf commented 2 years ago

Description

Snakemake has recently completely redesigned reports. They also have a useful new feature that makes it possible to present the whole thing more high-level and less file-based: https://snakemake.readthedocs.io/en/stable/snakefiles/reporting.html#defining-file-labels

This PR includes the first steps for using this new design.

Related Issue

N/A

Checklist

thomasbtf commented 2 years ago

trigger rerun

thomasbtf commented 2 years ago

trigger rerun for v7.3.2

thomasbtf commented 2 years ago

CI if failing with:

Creating conda environment ../workflow/envs/ragoo.yaml...
Downloading and installing remote packages.
CreateCondaEnvironmentException:
Could not create conda environment from /github/workspace/workflow/rules/../envs/ragoo.yaml:
ERROR   Could not write out repodata file '/opt/conda/pkgs/cache/f03598e2.json': No such file or directory

Never seem that