dna-trait-analysis

Goal: to find associations between dna data and visual traits.

Installation

pip install -r requirements.txt
pip install -e .

Preprocess Data

Run the notebook in notebooks/run_pipeline.ipynb. You may have to change the input and output directory constants and even the DNA_SCOPE depending on your task.

Training the Model

Run the following command:

python -m gtp.train_whole_genome --chromosome 18 --species erato --color color_3 --wing forewings --epochs 100 --batch_size 32 --exp_name test