Closed fedorov closed 2 years ago
Hi Andrey,
When datasets are "restricted-access" they should not be redistributed by IDC regardless of their license setting. These restricted datasets should have a license that specifies that you're only allowed to do whatever was agreed when you requested access, but we haven't had a chance to get this fixed in NBIA's license settings yet. In the meantime, I think if you exclude anything that's restricted from your list below it should be fine. If you want to send it to me one more time after you've done that I can sanity check it again.
Thanks, Justin
Justin Kirby (contractor) Technical Project Manager, Frederick National Laboratory for Cancer Research Technical Director, Cancer Imaging Informatics Lab ORCiD: https://orcid.org/0000-0003-3487-8922 240-276-6016 @.**@.>
From: Andrey Fedorov @.> Sent: Tuesday, August 31, 2021 12:45 PM To: ImagingDataCommons/IDC-WebApp @.> Cc: Kirby, Justin (NIH/NCI) [C] @.>; Mention @.> Subject: [ImagingDataCommons/IDC-WebApp] Add license information to the portal (#721)
Per discussion in the prioritization doc:
[image]https://user-images.githubusercontent.com/313942/131542595-0d1ccd57-0bc3-4a22-9346-d9a1cf34461d.png
Licenses we have retrieved at this moment are below.
@kirbyjuhttps://github.com/kirbyju can you please confirm we can go ahead with those?
4D-Lung CC BY 4.0 AAPM-RT-MAC CC BY 3.0 ACNS0332 CC BY 4.0 ACRIN-6698 CC BY 3.0 ACRIN-Contralateral-Breast-MR CC BY 4.0 ACRIN-DSC-MR-Brain CC BY 4.0 ACRIN-FLT-Breast CC BY 3.0 ACRIN-FMISO-Brain CC BY 3.0 ACRIN-HNSCC-FDG-PET-CT CC BY 4.0 ACRIN-NSCLC-FDG-PET CC BY 3.0 AHEP0731 CC BY 4.0 APOLLO CC BY 3.0 APOLLO-1-Pilot CC BY 3.0 APOLLO-5-LSCC CC BY 4.0 Anti-PD-1_Lung CC BY 3.0 Anti-PD-1_MELANOMA CC BY 3.0 Apollo2-Ovarian-Pilot CC BY 3.0 B-mode-and-CEUS-Liver CC BY 4.0 BREAST-DIAGNOSIS CC BY 3.0 Bladder Training CC BY 3.0 Brain-Tumor-Progression CC BY 3.0 Breast-Cancer-Screening-DBT CC BY-NC 4.0 Breast-MRI-NACT-Pilot CC BY 3.0 C4KC-KiTS CC BY 3.0 CALGB50303 CC BY 4.0 CBIS-DDSM CC BY 3.0 CC-Radiomics-Phantom CC BY 3.0 CC-Radiomics-Phantom-2 CC BY 3.0 CC-Radiomics-Phantom-3 CC BY 3.0 CITN-09 CC BY 3.0 CMB-CRC CC BY 4.0 CMB-LCA CC BY 4.0 CMB-MEL CC BY 4.0 CMB-MML CC BY 4.0 CMMD CC BY 4.0 CMMN-mouse CC BY 3.0 COVID-19 CC BY 3.0 COVID-19-AR CC BY 4.0 COVID-19-NY-SBU CC BY 4.0 CPTAC-CCRCC CC BY 3.0 CPTAC-CM CC BY 3.0 CPTAC-GBM CC BY 3.0 CPTAC-HNSCC CC BY 3.0 CPTAC-LSCC CC BY 3.0 CPTAC-LUAD CC BY 3.0 CPTAC-PDA CC BY 3.0 CPTAC-SAR CC BY 3.0 CPTAC-UCEC CC BY 3.0 CT COLONOGRAPHY CC BY 3.0 CT Lymph Nodes CC BY 3.0 DRO-Toolkit CC BY 3.0 Duke-Breast-Cancer-MRI CC BY-NC 4.0 Exceptional-Responders CC BY 3.0 HEAD-NECK-RADIOMICS-HN1 CC BY 3.0 HNSCC CC BY 3.0 HNSCC-3DCT-RT CC BY 3.0 Head-Neck Cetuximab CC BY 3.0 Head-Neck-PET-CT CC BY 3.0 ICDC-Glioma CC BY 4.0 ISPY1 CC BY 3.0 IvyGAP CC BY 3.0 LCTSC CC BY 3.0 LDCT-and-Projection-data CC BY 3.0 LGG-1p19qDeletion CC BY 3.0 LIDC-IDRI CC BY 3.0 Lung Phantom CC BY 3.0 Lung-Fused-CT-Pathology CC BY 3.0 Lung-PET-CT-Dx CC BY 4.0 LungCT-Diagnosis CC BY 3.0 MIDRC-RICORD-1A CC BY-NC 4.0 MIDRC-RICORD-1B CC BY-NC 4.0 MIDRC-RICORD-1C CC BY-NC 4.0 MRI-DIR CC BY 3.0 Mouse-Astrocytoma CC BY 3.0 Mouse-Mammary CC BY 3.0 NRG-1106 CC BY 3.0 NRG-1308 CC BY 3.0 NSCLC Radiogenomics CC BY 3.0 NSCLC-Cetuximab CC BY 3.0 NSCLC-RADIOMICS-INTEROBSERVER1 CC BY-NC 3.0 NSCLC-Radiomics CC BY-NC 3.0 NSCLC-Radiomics-Genomics CC BY-NC 3.0 NSCLC-Radiomics-Interobserver1 CC BY 3.0 NaF PROSTATE CC BY 3.0 OPC-Radiomics CC BY 3.0 OV Training CC BY 3.0 PDMR-292921-168-R CC BY 4.0 PDMR-425362-245-T CC BY 4.0 PDMR-833975-119-R CC BY 4.0 PDMR-997537-175-T CC BY 4.0 PDMR-BL0293-F563 CC BY 3.0 PDX-Mouse-Bladder CC BY 3.0 PDX-Pilot CC BY 3.0 PROSTATE-DIAGNOSIS CC BY 3.0 PROSTATE-MRI CC BY 3.0 PROSTATEx CC BY 3.0 Pancreas-CT CC BY 3.0 Pelvic-Reference-Data CC BY 3.0 Phantom FDA CC BY-NC 3.0 Prostate Fused-MRI-Pathology CC BY 3.0 Prostate-3T CC BY 3.0 Prostate-Cancer-MRI CC BY 3.0 Prostate-Challenge CC BY 3.0 Prostate-MRI-US-Biopsy CC BY 4.0 Pseudo-PHI-DICOM-Data CC BY 4.0 QIBA CT-1C CC BY 3.0 QIBA-CT-Liver-Phantom CC BY 4.0 QIN BRAIN CC BY 3.0 QIN Breast DCE-MRI CC BY 3.0 QIN DCE-MRI Challenge CC BY 3.0 QIN GBM DCE-MRI CC BY 3.0 QIN GBM Treatment Response CC BY 3.0 QIN LUNG CC BY 3.0 QIN LUNG CT CC BY 3.0 QIN LUNG LSC CC BY 3.0 QIN PET Phantom CC BY 3.0 QIN PHANTOM CC BY 3.0 QIN PROSTATE CC BY 3.0 QIN-ADC-Challenge CC BY 3.0 QIN-BRAIN-DSC-MRI CC BY 3.0 QIN-BREAST CC BY 3.0 QIN-BREAST-02 CC BY 3.0 QIN-HEADNECK CC BY 3.0 QIN-PHANTOM CC BY 3.0 QIN-PROSTATE CC BY 3.0 QIN-PROSTATE-Repeatability CC BY 4.0 QIN-SARCOMA CC BY 3.0 REMBRANDT CC BY 3.0 RIDER Breast MRI CC BY 3.0 RIDER Lung CT CC BY 3.0 RIDER Lung PET-CT CC BY 3.0 RIDER NEURO MRI CC BY 3.0 RIDER PHANTOM MRI CC BY 3.0 RIDER PHANTOM PET-CT CC BY 3.0 Renal Training CC BY 3.0 SPIE-AAPM Lung CT Challenge CC BY 3.0 Soft-tissue-Sarcoma CC BY 3.0 TCGA-BLCA CC BY 3.0 TCGA-BRCA CC BY 3.0 TCGA-CESC CC BY 3.0 TCGA-COAD CC BY 3.0 TCGA-ESCA CC BY 3.0 TCGA-GBM CC BY 3.0 TCGA-HNSC CC BY 3.0 TCGA-KICH CC BY 3.0 TCGA-KIRC CC BY 3.0 TCGA-KIRP CC BY 3.0 TCGA-LGG CC BY 3.0 TCGA-LIHC CC BY 3.0 TCGA-LUAD CC BY 3.0 TCGA-LUSC CC BY 3.0 TCGA-OV CC BY 3.0 TCGA-PRAD CC BY 3.0 TCGA-READ CC BY 3.0 TCGA-SARC CC BY 3.0 TCGA-STAD CC BY 3.0 TCGA-THCA CC BY 3.0 TCGA-UCEC CC BY 3.0 UPENN-GBM CC BY 4.0 VICTRE CC BY 3.0 Vestibular-Schwannoma-SEG CC BY 4.0
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Justin,
I think our question (at least my question) is whether the license info for public, unrestricted access collections is now correct.
Thanks, Bill
On Tue, Aug 31, 2021 at 1:32 PM Justin Kirby @.***> wrote:
Hi Andrey,
When datasets are "restricted-access" they should not be redistributed by IDC regardless of their license setting. These restricted datasets should have a license that specifies that you're only allowed to do whatever was agreed when you requested access, but we haven't had a chance to get this fixed in NBIA's license settings yet. In the meantime, I think if you exclude anything that's restricted from your list below it should be fine. If you want to send it to me one more time after you've done that I can sanity check it again.
Thanks, Justin
Justin Kirby (contractor) Technical Project Manager, Frederick National Laboratory for Cancer Research Technical Director, Cancer Imaging Informatics Lab ORCiD: https://orcid.org/0000-0003-3487-8922 240-276-6016 @.**@.>
From: Andrey Fedorov @.> Sent: Tuesday, August 31, 2021 12:45 PM To: ImagingDataCommons/IDC-WebApp @.> Cc: Kirby, Justin (NIH/NCI) [C] @.>; Mention @.> Subject: [ImagingDataCommons/IDC-WebApp] Add license information to the portal (#721)
Per discussion in the prioritization doc:
[image]< https://user-images.githubusercontent.com/313942/131542595-0d1ccd57-0bc3-4a22-9346-d9a1cf34461d.png
Licenses we have retrieved at this moment are below.
@kirbyjuhttps://github.com/kirbyju can you please confirm we can go ahead with those?
4D-Lung CC BY 4.0 AAPM-RT-MAC CC BY 3.0 ACNS0332 CC BY 4.0 ACRIN-6698 CC BY 3.0 ACRIN-Contralateral-Breast-MR CC BY 4.0 ACRIN-DSC-MR-Brain CC BY 4.0 ACRIN-FLT-Breast CC BY 3.0 ACRIN-FMISO-Brain CC BY 3.0 ACRIN-HNSCC-FDG-PET-CT CC BY 4.0 ACRIN-NSCLC-FDG-PET CC BY 3.0 AHEP0731 CC BY 4.0 APOLLO CC BY 3.0 APOLLO-1-Pilot CC BY 3.0 APOLLO-5-LSCC CC BY 4.0 Anti-PD-1_Lung CC BY 3.0 Anti-PD-1_MELANOMA CC BY 3.0 Apollo2-Ovarian-Pilot CC BY 3.0 B-mode-and-CEUS-Liver CC BY 4.0 BREAST-DIAGNOSIS CC BY 3.0 Bladder Training CC BY 3.0 Brain-Tumor-Progression CC BY 3.0 Breast-Cancer-Screening-DBT CC BY-NC 4.0 Breast-MRI-NACT-Pilot CC BY 3.0 C4KC-KiTS CC BY 3.0 CALGB50303 CC BY 4.0 CBIS-DDSM CC BY 3.0 CC-Radiomics-Phantom CC BY 3.0 CC-Radiomics-Phantom-2 CC BY 3.0 CC-Radiomics-Phantom-3 CC BY 3.0 CITN-09 CC BY 3.0 CMB-CRC CC BY 4.0 CMB-LCA CC BY 4.0 CMB-MEL CC BY 4.0 CMB-MML CC BY 4.0 CMMD CC BY 4.0 CMMN-mouse CC BY 3.0 COVID-19 CC BY 3.0 COVID-19-AR CC BY 4.0 COVID-19-NY-SBU CC BY 4.0 CPTAC-CCRCC CC BY 3.0 CPTAC-CM CC BY 3.0 CPTAC-GBM CC BY 3.0 CPTAC-HNSCC CC BY 3.0 CPTAC-LSCC CC BY 3.0 CPTAC-LUAD CC BY 3.0 CPTAC-PDA CC BY 3.0 CPTAC-SAR CC BY 3.0 CPTAC-UCEC CC BY 3.0 CT COLONOGRAPHY CC BY 3.0 CT Lymph Nodes CC BY 3.0 DRO-Toolkit CC BY 3.0 Duke-Breast-Cancer-MRI CC BY-NC 4.0 Exceptional-Responders CC BY 3.0 HEAD-NECK-RADIOMICS-HN1 CC BY 3.0 HNSCC CC BY 3.0 HNSCC-3DCT-RT CC BY 3.0 Head-Neck Cetuximab CC BY 3.0 Head-Neck-PET-CT CC BY 3.0 ICDC-Glioma CC BY 4.0 ISPY1 CC BY 3.0 IvyGAP CC BY 3.0 LCTSC CC BY 3.0 LDCT-and-Projection-data CC BY 3.0 LGG-1p19qDeletion CC BY 3.0 LIDC-IDRI CC BY 3.0 Lung Phantom CC BY 3.0 Lung-Fused-CT-Pathology CC BY 3.0 Lung-PET-CT-Dx CC BY 4.0 LungCT-Diagnosis CC BY 3.0 MIDRC-RICORD-1A CC BY-NC 4.0 MIDRC-RICORD-1B CC BY-NC 4.0 MIDRC-RICORD-1C CC BY-NC 4.0 MRI-DIR CC BY 3.0 Mouse-Astrocytoma CC BY 3.0 Mouse-Mammary CC BY 3.0 NRG-1106 CC BY 3.0 NRG-1308 CC BY 3.0 NSCLC Radiogenomics CC BY 3.0 NSCLC-Cetuximab CC BY 3.0 NSCLC-RADIOMICS-INTEROBSERVER1 CC BY-NC 3.0 NSCLC-Radiomics CC BY-NC 3.0 NSCLC-Radiomics-Genomics CC BY-NC 3.0 NSCLC-Radiomics-Interobserver1 CC BY 3.0 NaF PROSTATE CC BY 3.0 OPC-Radiomics CC BY 3.0 OV Training CC BY 3.0 PDMR-292921-168-R CC BY 4.0 PDMR-425362-245-T CC BY 4.0 PDMR-833975-119-R CC BY 4.0 PDMR-997537-175-T CC BY 4.0 PDMR-BL0293-F563 CC BY 3.0 PDX-Mouse-Bladder CC BY 3.0 PDX-Pilot CC BY 3.0 PROSTATE-DIAGNOSIS CC BY 3.0 PROSTATE-MRI CC BY 3.0 PROSTATEx CC BY 3.0 Pancreas-CT CC BY 3.0 Pelvic-Reference-Data CC BY 3.0 Phantom FDA CC BY-NC 3.0 Prostate Fused-MRI-Pathology CC BY 3.0 Prostate-3T CC BY 3.0 Prostate-Cancer-MRI CC BY 3.0 Prostate-Challenge CC BY 3.0 Prostate-MRI-US-Biopsy CC BY 4.0 Pseudo-PHI-DICOM-Data CC BY 4.0 QIBA CT-1C CC BY 3.0 QIBA-CT-Liver-Phantom CC BY 4.0 QIN BRAIN CC BY 3.0 QIN Breast DCE-MRI CC BY 3.0 QIN DCE-MRI Challenge CC BY 3.0 QIN GBM DCE-MRI CC BY 3.0 QIN GBM Treatment Response CC BY 3.0 QIN LUNG CC BY 3.0 QIN LUNG CT CC BY 3.0 QIN LUNG LSC CC BY 3.0 QIN PET Phantom CC BY 3.0 QIN PHANTOM CC BY 3.0 QIN PROSTATE CC BY 3.0 QIN-ADC-Challenge CC BY 3.0 QIN-BRAIN-DSC-MRI CC BY 3.0 QIN-BREAST CC BY 3.0 QIN-BREAST-02 CC BY 3.0 QIN-HEADNECK CC BY 3.0 QIN-PHANTOM CC BY 3.0 QIN-PROSTATE CC BY 3.0 QIN-PROSTATE-Repeatability CC BY 4.0 QIN-SARCOMA CC BY 3.0 REMBRANDT CC BY 3.0 RIDER Breast MRI CC BY 3.0 RIDER Lung CT CC BY 3.0 RIDER Lung PET-CT CC BY 3.0 RIDER NEURO MRI CC BY 3.0 RIDER PHANTOM MRI CC BY 3.0 RIDER PHANTOM PET-CT CC BY 3.0 Renal Training CC BY 3.0 SPIE-AAPM Lung CT Challenge CC BY 3.0 Soft-tissue-Sarcoma CC BY 3.0 TCGA-BLCA CC BY 3.0 TCGA-BRCA CC BY 3.0 TCGA-CESC CC BY 3.0 TCGA-COAD CC BY 3.0 TCGA-ESCA CC BY 3.0 TCGA-GBM CC BY 3.0 TCGA-HNSC CC BY 3.0 TCGA-KICH CC BY 3.0 TCGA-KIRC CC BY 3.0 TCGA-KIRP CC BY 3.0 TCGA-LGG CC BY 3.0 TCGA-LIHC CC BY 3.0 TCGA-LUAD CC BY 3.0 TCGA-LUSC CC BY 3.0 TCGA-OV CC BY 3.0 TCGA-PRAD CC BY 3.0 TCGA-READ CC BY 3.0 TCGA-SARC CC BY 3.0 TCGA-STAD CC BY 3.0 TCGA-THCA CC BY 3.0 TCGA-UCEC CC BY 3.0 UPENN-GBM CC BY 4.0 VICTRE CC BY 3.0 Vestibular-Schwannoma-SEG CC BY 4.0
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Justin, yes, makes sense. I understand it is confusing, since the list includes all of the collections. @bcli4d can you give the list of just the collections we will be including, with the corresponding licenses, so Justin can help us finalize this?
I'm working on generating a table for Justin.
In the meantime... We refer to APOLLO-1-VA as APOLLO because APOLLO was the ID that was expected by the various APIs that take a collection ID parameter. Given the transition to APOLLO-5-LSCC, we expect to treat APOLLO/APOLLO-1-VA as a "retired" collection (probably in a release after the NLST release) and add APOLLO-5-LSCC. The APOLLO data should continue to be available.
The table that Andrey attached above shows that the APOLLO collection has a CC BY 3.0 license. However, the (retired) APOLLO-1-VA wiki page https://wiki.cancerimagingarchive.net/display/Public/APOLLO-1-VA#24281911e16fe234091144e28bf0dcf8d5f2eb4c says "This data set may be subject to usage restrictions set out by the APOLLO network.", and it no longer shows a license. Our BQ metadata includes a link to this page, which users will interpret to mean that they may no longer use data that they might have earlier used. Seems like a problem.
Bill
On Tue, Aug 31, 2021 at 1:39 PM Andrey Fedorov @.***> wrote:
Justin, yes, makes sense. I understand it is confusing, since the list includes all of the collections. @bcli4d https://github.com/bcli4d can you give the list of just the collections we will be including, with the corresponding licenses, so Justin can help us finalize this?
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License list: 1 NLST 2 4D-Lung CC BY 3.0 3 AAPM-RT-MAC CC BY 3.0 4 ACRIN-FLT-Breast CC BY 3.0 5 ACRIN-FMISO-Brain CC BY 3.0 6 ACRIN-NSCLC-FDG-PET CC BY 3.0 7 APOLLO CC BY 3.0 8 Anti-PD-1_Lung CC BY 3.0 9 Anti-PD-1_MELANOMA CC BY 3.0 10 BREAST-DIAGNOSIS CC BY 3.0 11 Brain-Tumor-Progression CC BY 3.0 12 Breast-MRI-NACT-Pilot CC BY 3.0 13 C4KC-KiTS CC BY 3.0 14 CPTAC-CCRCC CC BY 3.0 15 CPTAC-CM CC BY 3.0 16 CPTAC-GBM CC BY 3.0 17 CPTAC-HNSCC CC BY 3.0 18 CPTAC-LSCC CC BY 3.0 19 CPTAC-LUAD CC BY 3.0 20 CPTAC-PDA CC BY 3.0 21 CPTAC-SAR CC BY 3.0 22 CPTAC-UCEC CC BY 3.0 23 CT COLONOGRAPHY CC BY 3.0 24 CT Lymph Nodes CC BY 3.0 25 DRO-Toolkit CC BY 3.0 26 HEAD-NECK-RADIOMICS-HN1 CC BY 3.0 27 HNSCC CC BY 3.0 28 HNSCC-3DCT-RT CC BY 3.0 29 Head-Neck Cetuximab CC BY 3.0 30 Head-Neck-PET-CT CC BY 3.0 31 ISPY1 CC BY 3.0 32 IvyGAP CC BY 3.0 33 LCTSC CC BY 3.0 34 LGG-1p19qDeletion CC BY 3.0 35 LIDC-IDRI CC BY 3.0 36 Lung Phantom CC BY 3.0 37 Lung-Fused-CT-Pathology CC BY 3.0 38 LungCT-Diagnosis CC BY 3.0 39 MRI-DIR CC BY 3.0 40 Mouse-Astrocytoma CC BY 3.0 41 Mouse-Mammary CC BY 3.0 42 NSCLC Radiogenomics CC BY 3.0 43 NaF PROSTATE CC BY 3.0 44 OPC-Radiomics CC BY 3.0 45 PDMR-833975-119-R CC BY 3.0 46 PDMR-BL0293-F563 CC BY 3.0 47 PROSTATE-MRI CC BY 3.0 48 PROSTATEx CC BY 3.0 49 Pancreas-CT CC BY 3.0 50 Pelvic-Reference-Data CC BY 3.0 51 Prostate Fused-MRI-Pathology CC BY 3.0 52 Prostate-3T CC BY 3.0 53 QIBA CT-1C CC BY 3.0 54 QIN Breast DCE-MRI CC BY 3.0 55 QIN GBM Treatment Response CC BY 3.0 56 QIN LUNG CT CC BY 3.0 57 QIN-BRAIN-DSC-MRI CC BY 3.0 58 QIN-BREAST CC BY 3.0 59 QIN-HEADNECK CC BY 3.0 60 REMBRANDT CC BY 3.0 61 RIDER Breast MRI CC BY 3.0 62 RIDER Lung CT CC BY 3.0 63 RIDER Lung PET-CT CC BY 3.0 64 RIDER NEURO MRI CC BY 3.0 65 SPIE-AAPM Lung CT Challenge CC BY 3.0 66 Soft-tissue-Sarcoma CC BY 3.0 67 TCGA-BLCA CC BY 3.0 68 TCGA-BRCA CC BY 3.0 69 TCGA-CESC CC BY 3.0 70 TCGA-COAD CC BY 3.0 71 TCGA-ESCA CC BY 3.0 72 TCGA-GBM CC BY 3.0 73 TCGA-HNSC CC BY 3.0 74 TCGA-KICH CC BY 3.0 75 TCGA-KIRC CC BY 3.0 76 TCGA-KIRP CC BY 3.0 77 TCGA-LGG CC BY 3.0 78 TCGA-LIHC CC BY 3.0 79 TCGA-LUAD CC BY 3.0 80 TCGA-LUSC CC BY 3.0 81 TCGA-OV CC BY 3.0 82 TCGA-PRAD CC BY 3.0 83 TCGA-READ CC BY 3.0 84 TCGA-SARC CC BY 3.0 85 TCGA-STAD CC BY 3.0 86 TCGA-THCA CC BY 3.0 87 TCGA-UCEC CC BY 3.0 88 VICTRE CC BY 3.0 89 ACRIN-DSC-MR-Brain CC BY 4.0 90 COVID-19-AR CC BY 4.0 91 ICDC-Glioma CC BY 4.0 92 Lung-PET-CT-Dx CC BY 4.0 93 PDMR-292921-168-R CC BY 4.0 94 PDMR-425362-245-T CC BY 4.0 95 PDMR-997537-175-T CC BY 4.0 96 Prostate-MRI-US-Biopsy CC BY 4.0 97 Pseudo-PHI-DICOM-Data CC BY 4.0 98 QIN-PROSTATE-Repeatability CC BY 4.0 99 Vestibular-Schwannoma-SEG CC BY 4.0 100 NSCLC-RADIOMICS-INTEROBSERVER1 CC BY-NC 3.0 101 NSCLC-Radiomics CC BY-NC 3.0 102 NSCLC-Radiomics-Genomics CC BY-NC 3.0 103 Phantom FDA CC BY-NC 3.0 104 Breast-Cancer-Screening-DBT CC BY-NC 4.0 105 MIDRC-RICORD-1A CC BY-NC 4.0 106 MIDRC-RICORD-1B CC BY-NC 4.0 107 MIDRC-RICORD-1C CC BY-NC 4.0
On Tue, Aug 31, 2021 at 7:11 PM Bill Clifford @.***> wrote:
I'm working on generating a table for Justin.
In the meantime... We refer to APOLLO-1-VA as APOLLO because APOLLO was the ID that was expected by the various APIs that take a collection ID parameter. Given the transition to APOLLO-5-LSCC, we expect to treat APOLLO/APOLLO-1-VA as a "retired" collection (probably in a release after the NLST release) and add APOLLO-5-LSCC. The APOLLO data should continue to be available.
The table that Andrey attached above shows that the APOLLO collection has a CC BY 3.0 license. However, the (retired) APOLLO-1-VA wiki page https://wiki.cancerimagingarchive.net/display/Public/APOLLO-1-VA#24281911e16fe234091144e28bf0dcf8d5f2eb4c says "This data set may be subject to usage restrictions set out by the APOLLO network.", and it no longer shows a license. Our BQ metadata includes a link to this page, which users will interpret to mean that they may no longer use data that they might have earlier used. Seems like a problem.
Bill
On Tue, Aug 31, 2021 at 1:39 PM Andrey Fedorov @.***> wrote:
Justin, yes, makes sense. I understand it is confusing, since the list includes all of the collections. @bcli4d https://github.com/bcli4d can you give the list of just the collections we will be including, with the corresponding licenses, so Justin can help us finalize this?
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@bcli4d Can I get this as a table in sheets or Excel, something along those lines?
Run this query:
SELECT tcia_api_collection_id, license_short_name FROM
idc-dev-etl.idc_v4.original_collections_metadata
order by
license_short_name , tcia_api_collection_id
On Tue, Sep 7, 2021 at 8:55 AM S. Paquette @.***> wrote:
@bcli4d https://github.com/bcli4d Can I get this as a table in sheets or Excel, something along those lines?
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Got it, thank you! @fedorov Are we just listing the license name, or do we want a link to the license page, or...
Ideally, we would want to have a link for every item that can be used for filtering in the webapp UI, but we don't have it for anything. So I am fine to not link the license type to anything, at least for the initial iteration.
The TCIA portal includes the license long name in the each collection description tool tip, but no link.
On Tue, Sep 7, 2021 at 12:31 PM Andrey Fedorov @.***> wrote:
Ideally, we would want to have a link for every item that can be used for filtering in the webapp UI, but we don't have it for anything. So I am fine to not link it to anything at least for the initial iteration.
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Per 9/14 meeting: Not critical to list on collections page, @bcli4d to update dicom_all to include listing for NLST
Forgive me - I know it's likely a separate issue, but I would like to discuss if we should rearrange the license filter outside "Original" section, since it is kind of a different beast. I am going to reopen, and we can decide if close or open a new issue after touching base at the Tue call.
@fedorov I'd like to ask we close this and make a new ticket, as the work described above is completed.
Per discussion in the prioritization doc:
Licenses we have retrieved at this moment are below.
@kirbyju can you please confirm we can go ahead with those?