Cannot find spectrum in MGF file

[GoogleCodeExporter]

> What steps will reproduce the problem?

Do the SearchGUI search
Try to use Peptide Shaker after

> What is the expected output? What do you see instead?

i expect to see the identified peptides and proteins
instead:

An error occured while loading the identification files:
Fri Mar 29 09:46:31 CDT 2013    Spectrum '031413_01_HC.1052.1052.5 
RTINSECONDS=1334.9848' in mgf file '031413_01_HC.mgf' not found.

... Import cancelled
(logfile attached)

> What version of the product are you using? On what operating system?
peptide shaker 0.19.2
SearchGUI 1.12.1

Windows XP, 32-bit.
I use msconvert to create .mgf files
I had no problems with previous versions of the peptide-shaker.
> Please provide any additional information below.

> If the reported issue resulted in the tool crashing, please
> also upload the file called PeptideShaker.log (found in the
> PeptideShaker-X.Y.Z\conf folder).

Original issue reported on code.google.com by BorisZyb...@gmail.com on 29 Mar 2013 at 3:03

Attachments:

• logfile.txt

[GoogleCodeExporter]

it turns out to be one of those database issues -
I recreated m protein DB from uniprot,
and that fixed the problem

Original comment by BorisZyb...@gmail.com on 29 Mar 2013 at 8:17

[GoogleCodeExporter]

Original comment by harald.b...@gmail.com on 31 Mar 2013 at 4:15

• Changed state: Fixed