=============== PeptideShaker

To start PeptideShaker simply double click the jar file.

From the command line use 'java -jar PeptideShaker-X.Y.Z.jar'. (Replace X.Y.Z with the PeptideShaker version number.)

For help with runnng PeptideShaker please see: http://code.google.com/p/peptide-shaker/#Troubleshooting

======================== PeptideShaker Web Page

For updated information about PeptideShaker please visit: http://peptide-shaker.googlecode.com

========= License

Copyright Marc Vaudel, Harald Barsnes and Lennart Martens.

Licensed under the Apache License, Version 2.0 (the "License"); you may not use this file except in compliance with the License. You may obtain a copy of the License at

   http://www.apache.org/licenses/LICENSE-2.0

Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License.

Please note that some of the JAR files used by the PeptideShaker may not have the same license as PeptideShaker itself. If you want to use any of these in a different context, make sure to obtain the original license for the JAR file in question.