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ImmuneDynamics
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Spectre
A computational toolkit in R for the integration, exploration, and analysis of high-dimensional single-cell cytometry and imaging data.
https://immunedynamics.github.io/spectre/
MIT License
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error in prep.cytonorm
#127
domivf
closed
2 years ago
4
Error in multicut_2_segment
#126
adriadalmau
opened
2 years ago
0
‘simple’ discovery analysis workflow
#125
sailseem
closed
2 years ago
7
truncate_max_range = FALSE
#121
dietmar113
closed
2 years ago
2
write.hdf5: plot merged channel stored in AR?
#120
mabar1
opened
2 years ago
1
write.hdf5: Error in quantile.default(over.one, 0.05), missing values
#119
mabar1
opened
2 years ago
3
Review the NA vs 0 metrics
#118
tomashhurst
opened
2 years ago
0
Region analysis with 'NA's
#117
tomashhurst
opened
2 years ago
0
Centroid label missing if the x and y range is < 1
#116
ghar1821
opened
2 years ago
3
Unsuccessful installation of Spectre
#113
raquel-galfig
closed
2 years ago
3
area analysis on DATA.TABLE
#111
Mark-Ste
opened
2 years ago
1
advanced spatial, error in .local
#107
Mark-Ste
closed
2 years ago
1
where to follow the cellular and spatial analysis
#106
sailseem
closed
2 years ago
1
write.files(cell.dat, i, write.csv = FALSE, write.fcs = TRUE)
#105
sailseem
closed
2 years ago
2
Updates
#103
tomashhurst
closed
3 years ago
0
Development
#102
tomashhurst
closed
3 years ago
0
Development
#90
tomashhurst
closed
3 years ago
0
Why is always that the first cluster is not shown in umap? Missing values Warning
#89
denvercal1234GitHub
closed
3 years ago
4
Why does changing meta.k not produce the expected number of clusters?
#88
denvercal1234GitHub
closed
3 years ago
5
Error in train.cytnorm
#87
ReubenMcG
closed
1 month ago
15
Error when using 'make.sumtable' on Imported data
#82
ReubenMcG
closed
3 years ago
1
do.extract function incorrectly calls spatial.dat object, not dat argument
#79
hrj21
closed
3 years ago
4
read.spatial.data gives me working directory error
#76
hrj21
closed
3 years ago
11
Error with FlowSom
#73
Laurent2873
closed
3 years ago
1
TIFF to FACS issues
#72
sailseem
closed
3 years ago
4
Cellprofiler cannot open module
#71
sailseem
closed
2 years ago
7
issue with latest version of cytonorm and flowsom
#70
ziyuanhe
closed
2 years ago
11
Pre release
#67
tomashhurst
closed
3 years ago
0
Development
#66
tomashhurst
closed
3 years ago
0
Updates
#65
tomashhurst
closed
3 years ago
0
Delete IMC_segmentation_step_2_script-checkpoint.ipynb
#64
tomashhurst
closed
3 years ago
0
Development
#63
tomashhurst
closed
3 years ago
0
Development
#62
tomashhurst
closed
3 years ago
0
Updates required to correct errors with CytoNorm
#61
tomashhurst
closed
3 years ago
1
Getting the expression set from Spectre
#60
fi1d18
closed
3 years ago
4
Development
#59
tomashhurst
closed
3 years ago
0
Installation fixes
#58
tomashhurst
closed
3 years ago
0
Development
#57
tomashhurst
closed
3 years ago
0
sf problems on windows but not mac
#56
tomashhurst
closed
3 years ago
2
Development
#55
tomashhurst
closed
3 years ago
0
Development
#54
tomashhurst
closed
3 years ago
0
Update
#53
tomashhurst
closed
3 years ago
0
Fixes to spatial analysis functions
#52
tomashhurst
closed
3 years ago
0
issue by data during fine alignment
#50
gjrodrigo
closed
2 years ago
5
Bug fixing spectre 0.5
#51
mabar1
closed
3 years ago
16
Update
#47
tomashhurst
closed
3 years ago
0
Updates
#44
tomashhurst
closed
3 years ago
0
Spatial
#43
tomashhurst
closed
3 years ago
0
Development
#42
tomashhurst
closed
3 years ago
0
Updates
#40
tomashhurst
closed
3 years ago
0
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