search

InPreD / tso500_nxf_workflow

Nextflow workflow to run Illumina LocalApp and TSOPPI on TSO500 data
MIT License
0 stars 1 forks source link

readme

TSO500 nextflow workflow

Introduction :speech_balloon:

inpred/tso500_nxf_workflow is a bioinformatics analysis pipeline for processing TSO500 panel data.

Dependencies :exclamation:

Nextflow

Nf-core

Docker

Usage :rocket:

Input

Nxf samplesheet

Run

$ nextflow run https://github.com/InPreD/tso500_nxf_workflow -r main -profile docker --input <nxf samplesheet> --outdir output --tso500_resource_folder <path to resources>

Output