IndianaBiosciences / toxapp

A publicly-available industry-inspired Collaborative Toxicogenomics analysis platform
Apache License 2.0
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configure mapping from platform to array selection as part of computation #44

Open sutherlandjeff opened 5 years ago

sutherlandjeff commented 5 years ago

When adding a measurement technology (e.g. a new chip), rather than hard coding (in gffactors.py and NORM.R), set up a config that maps the measurement tech as presented in the new experiment dialog to actual selection in NORM.R (and perhaps installation of the cdf via setup_server.sh).

To be discussed - Jeff manually added several other platforms and current mechanism means someone who needs a specific dataset cannot use the platform if it's not supported. We have an 'add measurement tech', but except for RNAseq it would not run out of the box.