Learn-Morph-Infer: A new way of solving the inverse problem for brain tumor modeling

The code to the paper at MedIA [MedIA] [arXiv]

Dependencies

Pytorch >1.4

Torchvision

Pickle5

Tensorboard

Running

for training:

• go to torchcode folder
• just type ./run_training.sh in the terminal

for testing:

• type ./run_testing.sh in the terminal

Numerical brain tumor solvers

The solvers used in our work can be found at:

• Reaction-diffusion model
• Reaction-advection-diffusion model

Data

The dataset of 30k numerical simulations can be found here: https://zenodo.org/records/10521625

Inference

The inference script for arbitrary MRI scans can be found here: https://github.com/jonasw247/infer-LMI