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J-81
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dp_tools
MIT License
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VV_DESEQ2_ANALYSIS Integer sample names error
#48
torres-alexis
closed
2 weeks ago
0
check_sample_in_multiqc_report() handling numeric sample names
#47
cyouh95
opened
3 weeks ago
0
Metrics extraction subfeature raw trimmed align count only
#46
asaravia-butler
opened
10 months ago
0
Metrics extraction subfeature raw trimmed align only
#45
asaravia-butler
opened
10 months ago
0
Metrics extraction subfeature raw only
#44
asaravia-butler
opened
10 months ago
0
Metrics extraction subfeature se
#43
asaravia-butler
opened
10 months ago
0
Metrics extraction subfeature
#42
asaravia-butler
opened
10 months ago
0
ValueError: Length of new names must be 1, got 2
#41
asaravia-butler
opened
10 months ago
0
KeyError: 'STRANDED'
#40
asaravia-butler
closed
10 months ago
2
Metrics extraction subfeature se
#39
asaravia-butler
closed
10 months ago
1
UnboundLocalError: local variable 'mapped_data' referenced before assignment
#38
asaravia-butler
opened
10 months ago
10
IndexError: list index out of range - error when running extract_datasets.py
#37
asaravia-butler
opened
10 months ago
0
create metrics_extraction_subfeature branch for datasets with raw, trimmed, and aligned multiQC only
#36
asaravia-butler
closed
10 months ago
0
create metrics_extraction_subfeature branch for datasets with raw and trimmed multiQC only
#35
asaravia-butler
closed
10 months ago
0
UnboundLocalError affecting multiQC metrics for OSD-379
#34
asaravia-butler
closed
10 months ago
0
create metrics_extraction_subfeature branch for SE
#33
asaravia-butler
closed
10 months ago
0
links to download multiqc files seem to be broken
#32
asaravia-butler
opened
10 months ago
1
download_multiqc_from_OSD.py doesn't accept output directory
#31
asaravia-butler
opened
10 months ago
1
No python project file available in $REPO_DIRECTORY
#30
asaravia-butler
closed
10 months ago
1
Add --assume-OSDR-urls as option for runsheet generation
#29
J-81
opened
1 year ago
0
Check for adaptor content in trimmed fastqc files
#28
J-81
opened
1 year ago
0
Protocol checks using iteration to load data assets results in check payloads binding last item in iteration
#27
J-81
opened
1 year ago
1
Add component scope specification and enable/disable mechanism in improved interface
#26
J-81
opened
1 year ago
0
Add dataset processed status scanner by assay
#25
J-81
opened
1 year ago
0
Update documentation for updated api introduced in 1.3.0
#24
J-81
opened
1 year ago
0
Add exploratory tools for interpretting V&V logs
#23
J-81
opened
1 year ago
0
Add plugin template generation command
#22
J-81
opened
1 year ago
0
Ensure messages are determinisitc
#21
J-81
opened
1 year ago
0
Windows Incompatibility with Symlinks causes issues using 'Latest' configuration version
#20
J-81
opened
1 year ago
0
Runsheet generation should raise an exception if two read files are found for single end dataset
#19
J-81
closed
1 year ago
1
Make missed data asset loading from glob error more verbose
#18
J-81
closed
1 year ago
1
update bulkRNASeq configuration for ISA archive data asset
#17
J-81
closed
1 year ago
1
Assess behaviour with desynced OSD/GLDS entires
#16
J-81
opened
1 year ago
0
fix: remove extra space
#15
J-81
closed
1 year ago
0
Unit associated with Characteristic assigned to Factor Value
#14
J-81
closed
1 year ago
0
Mike dev
#13
AstrobioMike
closed
1 year ago
7
chore: update changelog
#12
J-81
closed
1 year ago
0
fix: sync name with workflow output
#11
J-81
closed
1 year ago
0
fix: add "micro sign" unicode character to whitelist
#10
J-81
closed
1 year ago
0
Patch-update-bulkRNAseq-config
#9
J-81
closed
1 year ago
0
Patch-failed-runsheet-generation
#8
J-81
closed
2 years ago
0
Patch-failed-ercc-detection
#7
J-81
closed
2 years ago
0
Reverted half-way change from development branch.
#6
J-81
closed
2 years ago
0
Reworked data model to allow flexible loading
#5
J-81
closed
2 years ago
0
Reworked data model
#4
J-81
closed
2 years ago
1
Factor Value
#3
jbutel
opened
2 years ago
0
added new functions
#2
jbutel
closed
2 years ago
0
Created practice check functions
#1
Kenny-Tang-1
closed
2 years ago
0