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JEFworks-Lab
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STalign
Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping
https://jef.works/STalign/
GNU General Public License v3.0
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Sagittal section registration to allen brain atlas
#33
cobioda
opened
2 days ago
0
GPU bug?
#32
andrewjkwok
closed
2 days ago
1
Cropping of source image by affine transform
#31
Nick-Eagles
closed
2 months ago
6
OverflowError in `STalign.LDDMM` and help aligning Visium data
#30
Nick-Eagles
closed
2 months ago
2
Extracting coordinates after initial affine transformation only
#29
dbuszta
opened
6 months ago
1
Aligning pathologist annotation and spatial transcriptomics
#28
pakiessling
closed
6 months ago
2
Affine transform issue
#27
ebolotin02
opened
8 months ago
1
Out of memory error
#26
ebolotin02
closed
6 months ago
3
Align DAPI to blue channel of H&E
#25
ViriatoII
opened
8 months ago
0
[STalign] code for fig 3 c,d
#24
jpark27
closed
6 months ago
1
using transcript coordinates as input
#23
pr4deepr
closed
8 months ago
7
[Just a question] Point vs. Curve annotator
#22
estellad
closed
10 months ago
1
Align two Visium datas
#21
Lixinyoung
closed
10 months ago
3
registration using gene expression information
#20
common-chenlab
opened
10 months ago
5
How to choose parameters?
#19
grst
opened
11 months ago
2
update plotting for cuda
#18
kpclifton
closed
11 months ago
0
[Enhancement] Automatically subset to the common region between partially overlapping replicates
#17
estellad
closed
10 months ago
4
Downsizing of .tif to .png for post-Xenium 1 H&E
#16
estellad
closed
11 months ago
2
calculate target registration error on landmarks
#15
kpclifton
closed
1 year ago
0
Measured time for various jupyter notebooks and updated outputs of the STalign.LDDMM function in jupyter notebooks
#14
GohtaAihara
closed
1 year ago
0
Changed "weight matrix" to "weight 2D array" for relevant outputs of …
#13
GohtaAihara
closed
1 year ago
0
Alignment of serial sections
#12
JLiLab
closed
1 year ago
1
merfish merfish landmark based affine alignment
#11
kpclifton
closed
1 year ago
0
Updated the "Installation & Import" section of README.md
#10
GohtaAihara
closed
1 year ago
0
add merfish visium alignment to STalign website
#9
kpclifton
closed
1 year ago
0
create point annotator example notebook
#8
kpclifton
closed
1 year ago
0
make point annotator
#7
kpclifton
closed
1 year ago
0
Error while executing curve_annotator.py
#6
Ashlesha217
closed
1 year ago
3
Create LICENSE
#5
JEFworks
closed
1 year ago
0
add merfish-merfish notebook
#4
kpclifton
closed
1 year ago
0
Installation
#3
JLiLab
closed
1 year ago
3
Generate docs and tutorials pages on Website
#2
JEFworks
closed
1 year ago
0
Invert axes
#1
JEFworks
closed
1 year ago
0