FishData

Compile and harmonize catch rates from fishery-independent surveys of fish populations

Description

• Scrape and harmonize bottom trawl survey data from Alaska Fisheries Science Center and Northwest Fisheries Science Center
• Adds zeros (sampling occasions without catch of any given species) automatically
• Stores data locally to avoid excessive survey usage
• Hopefully with be moved to an rOpenSci project to ensure that code is applicable for multiple surveys, regions, and agencies

Installation Instructions

# Install and load devtools package
install.packages("devtools")

# Install package
devtools::install_github("james-thorson/FishData")

Example usage

• Download 20 most-frequently encountered species in bottom trawl survey for the Eastern Bering Sea

  Database = FishData::download_catch_rates( survey="EBSBTS", species_set=20 )

• Download Bocaccio in hook-and-line survey for California Current

  Database = FishData::download_catch_rates( survey="WCGHL", species_set="Sebastes paucispinis" )