Janelia-Trackathon-2023 traccuracy issues

Janelia-Trackathon-2023 / traccuracy

Utilities for computing common accuracy metrics on cell tracking challenge solutions with ground truth

https://traccuracy.readthedocs.io

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`load_ctc_data` makes two copies of the loaded array

#165 DragaDoncila opened 1 week ago
0
Documentation of track overlap metrics

#164 msschwartz21 opened 2 weeks ago
0
Documentation for division metrics

#163 msschwartz21 opened 2 weeks ago
0
Documentation for track errors nodes and edges

#162 msschwartz21 opened 2 weeks ago
0
Change dtype of gt_frame from np.uint16 to np.int64

#161 lmanan opened 2 weeks ago
1
Group PRs in release notes based on labels

#160 msschwartz21 closed 2 weeks ago
1
Reduce number of checkboxes in issue and PR templates

#159 msschwartz21 closed 2 weeks ago
0
ci(pre-commit.ci): autoupdate

#158 pre-commit-ci[bot] opened 1 month ago
0
Edge case in Mitotic Branching Correctness

#157 lmanan opened 1 month ago
2
Speed up IoU Matcher

#156 bentaculum closed 1 month ago
2
Fix frame buffer bug where predecessors were not checked properly

#155 cmalinmayor closed 2 weeks ago
6
ci(pre-commit.ci): autoupdate

#154 pre-commit-ci[bot] closed 1 month ago
0
Fix multiple IOU-related bugs

#153 cmalinmayor closed 1 month ago
2
Numpy < 2 causes TypeError in IOU Matcher with uint64 labels

#152 cmalinmayor closed 1 month ago
2
Remove support for python 3.8

#151 msschwartz21 closed 2 months ago
0
Add iou matcher option to use linear assignment to get one-to-one matching

#150 msschwartz21 closed 2 months ago
0
Check for missing computed endpoints in induced graph

#149 cmalinmayor closed 2 months ago
1
Speed up CTCMatcher

#148 bentaculum closed 5 months ago
1
Swap out networkx for rustworkx

#147 bentaculum opened 5 months ago
4
ci(pre-commit.ci): autoupdate

#146 pre-commit-ci[bot] closed 2 months ago
0
ci(dependabot): bump softprops/action-gh-release from 1 to 2

#145 dependabot[bot] closed 2 months ago
0
ci(pre-commit.ci): autoupdate

#144 pre-commit-ci[bot] closed 7 months ago
0
ci(dependabot): bump codecov/codecov-action from 3 to 4

#143 dependabot[bot] closed 8 months ago
0
Add pyarrow to pyproject

#142 cmalinmayor closed 8 months ago
0
Check empty subgraph

#141 cmalinmayor closed 1 month ago
9
ci(dependabot): bump actions/cache from 3 to 4

#140 dependabot[bot] closed 8 months ago
1
Fix CTC matching for emtpy frames

#139 bentaculum closed 8 months ago
4
CTC matcher fails if some frame of the predictions does not contain any objects

#138 bentaculum closed 8 months ago
0
Key Error in CTC edge error computation with non-split vertices

#137 cmalinmayor closed 1 month ago
4
Change `frame_buffer` kwarg to `max_frame_buffer`

#136 msschwartz21 closed 8 months ago
0
Add high level documentation explaining the access patterns supported through the TrackingGraph API vs through networkx graph

#135 cmalinmayor opened 8 months ago
0
Point to segmentation matcher

#134 cmalinmayor opened 8 months ago
0
ci(pre-commit.ci): autoupdate

#133 pre-commit-ci[bot] closed 8 months ago
1
Improve runtime performance for track overlap benchmarking

#132 msschwartz21 opened 9 months ago
0
ci(dependabot): bump actions/setup-python from 4 to 5

#131 dependabot[bot] closed 8 months ago
1
Expand CTC DET Measure docs

#130 DragaDoncila closed 9 months ago
1
(Best way to) Avoid ragged error annotations on graph

#129 cmalinmayor opened 10 months ago
0
ci(pre-commit.ci): autoupdate

#128 pre-commit-ci[bot] closed 10 months ago
1
Add tests for correct usage of gap-closing or frame-skip edges

#127 DragaDoncila opened 10 months ago
5
Create a `Results` class for storing metric output with associated metadata

#126 msschwartz21 closed 9 months ago
4
fix import loop

#125 tlambert03 closed 10 months ago
5
Fix subclass docstrings for sphinx autoapi

#124 msschwartz21 closed 10 months ago
1
Remove Pr template headers

#123 msschwartz21 closed 10 months ago
0
Create general pr template

#122 msschwartz21 closed 10 months ago
0
Add pull request and issue templates

#121 msschwartz21 closed 10 months ago
0
Feature: Create Result class to store all info about pipeline and results

#120 cmalinmayor closed 9 months ago
0
Add CTC format checks in loader

#119 bentaculum closed 9 months ago
9
Update `run_metrics` to take instantiated `Matchers` and `Metrics` as input

#118 msschwartz21 closed 10 months ago
2
Add `TrackOverlapMetrics` to benchmarking

#117 msschwartz21 opened 10 months ago
4
Add written documentation for errors and metrics

#116 msschwartz21 closed 2 weeks ago
9