Path issue with Illumina adapters for Trimmomatic

JasonJWilliamsNY / dc_genomics_docker

Container development for Data Carpentry Genomics lessons

2 stars 2 forks source link

Open naupaka opened 5 years ago

naupaka commented 5 years ago

This command from the lesson doesn't work:

cp ~/miniconda3/pkgs/trimmomatic-0.38-0/share/trimmomatic-0.38-0/adapters/NexteraPE-PE.fa .

because of how the things are installed. This works instead:

cp /opt/conda/pkgs/trimmomatic-0.38-0/share/trimmomatic-0.38-0/adapters/NexteraPE-PE.fa .