Container development for Data Carpentry Genomics lessons
docker pull jasonjwilliamsny/dc_genomics:dev_1.8
Clone this repo and place docker-persistant/
in
a convenient location on your server. In docker-persistant/
edit usernames.txt
; this file should have one or more valid linux
username(s) (one name per line). Accounts will be created in your
container for each user. The sample list has dcuser
which will be assigned
the password by the script 'data4Carp'
tip: You can edit the password in line 25 and 39 of initiate.sh
Note: Your user will have a home directory at /home/$user
This will be a symbolic link to a folder docker-persistant/$user
that will be created on the machine running the docker container.
In this way, data and changes made by the user on the hub will exist
persistently outside of the container.
docker-persistant/
in a suitable location on the
machine where Docker is hosted. The -v
option used at execution
will bind this folder.Make sure /docker-persistant/initiate.sh
is executable:
chmod +x SOMEPATH/docker-persistant/initiate.sh
Pull the image from dockerhub
docker pull jasonjwilliamsny/dc_genomics:dev_1.8
Start the container with this command (remember to edit the location of
docker-persistant/
)
docker run -p 8787:8787 -p 22:22 --name dc_genomics -d -v SOMEPATH/docker-persistant:/docker-persistant jasonjwilliamsny/dc_genomics:dev_1.8
Rstudio will be available at the ip address of the machine
127.0.0.1:8787
localhost:8787
SSH will be accessible at the ip address of the machine
127.0.0.1:22
localhost:22
Login
dcuser
data4Carp