Possible problem with Java and trimmomatic

[JasonJWilliamsNY]

This only happens with one set of fastq files

SRR2584863_1.fastq.gz SRR2584863_2.fastq.gz

TrimmomaticPE:` Started with arguments:
 SRR2584863_1.fastq.gz SRR2584863_2.fastq.gz SRR2584863_1.trim.fastq.gz SRR2584863_1un.trim.fastq.gz SRR2584863_2.trim.fastq.gz SRR2584863_2un.trim.fastq.gz SLIDINGWINDOW:4:20 MINLEN:25 ILLUMINACLIP:NexteraPE-PE.fa:2:40:15
Multiple cores found: Using 2 threads
Using PrefixPair: 'AGATGTGTATAAGAGACAG' and 'AGATGTGTATAAGAGACAG'
Using Long Clipping Sequence: 'GTCTCGTGGGCTCGGAGATGTGTATAAGAGACAG'
Using Long Clipping Sequence: 'TCGTCGGCAGCGTCAGATGTGTATAAGAGACAG'
Using Long Clipping Sequence: 'CTGTCTCTTATACACATCTCCGAGCCCACGAGAC'
Using Long Clipping Sequence: 'CTGTCTCTTATACACATCTGACGCTGCCGACGA'
ILLUMINACLIP: Using 1 prefix pairs, 4 forward/reverse sequences, 0 forward only sequences, 0 reverse only sequences
Quality encoding detected as phred33
#
[thread 897 also had an error]
# A fatal error has been detected by the Java Runtime Environment:
#
#  SIGILL (0x4) at pc=0x00007fe808491072, pid=871, tid=896
#
# JRE version: OpenJDK Runtime Environment (11.0.1+13) (build 11.0.1+13-LTS)
# Java VM: OpenJDK 64-Bit Server VM (11.0.1+13-LTS, mixed mode, tiered, compressed oops, g1 gc, linux-amd64)
# Problematic frame:
# J 413 c2 org.usadellab.trimmomatic.trim.IlluminaClippingTrimmer$IlluminaLongClippingSeq.readsSeqCompare(Lorg/usadellab/trimmomatic/fastq/FastqRecord;)Ljava/lang/Integer; (306 bytes) @ 0x00007fe808491072 [0x00007fe80848f560+0x0000000000001b12]
#
# No core dump will be written. Core dumps have been disabled. To enable core dumping, try "ulimit -c unlimited" before starting Java again
#
# An error report file with more information is saved as:
# /docker-persistant/dcuser/dc_workshop/data/untrimmed_fastq/hs_err_pid871.log
Could not load hsdis-amd64.so; library not loadable; PrintAssembly is disabled
#
# If you would like to submit a bug report, please visit:
#   http://www.azulsystems.com/support/
#
/bin/trimmomatic: line 60:   871 Aborted                 /bin/java -Xms512m -Xmx1g -jar /opt/conda/pkgs/trimmomatic-0.38-0/share/trimmomatic-0.38-0/trimmomatic.jar PE SRR2584863_1.fastq.gz SRR2584863_2.fastq.gz SRR2584863_1.trim.fastq.gz SRR2584863_1un.trim.fastq.gz SRR2584863_2.trim.fastq.gz SRR2584863_2un.trim.fastq.gz SLIDINGWINDOW:4:20 MINLEN:25 ILLUMINACLIP:NexteraPE-PE.fa:2:40:15

Also, some java info:

java -XshowSettings:properties -version
Property settings:
    awt.toolkit = sun.awt.X11.XToolkit
    file.encoding = ANSI_X3.4-1968
    file.separator = /
    java.awt.graphicsenv = sun.awt.X11GraphicsEnvironment
    java.awt.printerjob = sun.print.PSPrinterJob
    java.class.path = 
    java.class.version = 55.0
    java.home = /opt/conda/pkgs/openjdk-11.0.1-h516909a_1015
    java.io.tmpdir = /tmp
    java.library.path = /usr/java/packages/lib
        /usr/lib64
        /lib64
        /lib
        /usr/lib
    java.runtime.name = OpenJDK Runtime Environment
    java.runtime.version = 11.0.1+13-LTS
    java.specification.name = Java Platform API Specification
    java.specification.vendor = Oracle Corporation
    java.specification.version = 11
    java.vendor = Azul Systems, Inc.
    java.vendor.url = http://www.azulsystems.com/
    java.vendor.url.bug = http://www.azulsystems.com/support/
    java.vendor.version = Zulu11.2+3
    java.version = 11.0.1
    java.version.date = 2018-10-16
    java.vm.compressedOopsMode = 32-bit
    java.vm.info = mixed mode
    java.vm.name = OpenJDK 64-Bit Server VM
    java.vm.specification.name = Java Virtual Machine Specification
    java.vm.specification.vendor = Oracle Corporation
    java.vm.specification.version = 11
    java.vm.vendor = Azul Systems, Inc.
    java.vm.version = 11.0.1+13-LTS
    jdk.debug = release
    line.separator = \n 
    os.arch = amd64
    os.name = Linux
    os.version = 4.9.125-linuxkit
    path.separator = :
    sun.arch.data.model = 64
    sun.boot.library.path = /opt/conda/pkgs/openjdk-11.0.1-h516909a_1015/lib
    sun.cpu.endian = little
    sun.cpu.isalist = 
    sun.io.unicode.encoding = UnicodeLittle
    sun.java.launcher = SUN_STANDARD
    sun.jnu.encoding = ANSI_X3.4-1968
    sun.management.compiler = HotSpot 64-Bit Tiered Compilers
    sun.os.patch.level = unknown
    user.country = US
    user.dir = /docker-persistant/dcuser/dc_workshop/data/untrimmed_fastq
    user.home = /home/dcuser
    user.language = en
    user.name = dcuser
    user.timezone = 

openjdk version "11.0.1" 2018-10-16 LTS
OpenJDK Runtime Environment Zulu11.2+3 (build 11.0.1+13-LTS)
OpenJDK 64-Bit Server VM Zulu11.2+3 (build 11.0.1+13-LTS, mixed mode)

The AWS java setup is:

java -XshowSettings:properties -version
Property settings:
    awt.toolkit = sun.awt.X11.XToolkit
    file.encoding = UTF-8
    file.encoding.pkg = sun.io
    file.separator = /
    java.awt.graphicsenv = sun.awt.X11GraphicsEnvironment
    java.awt.printerjob = sun.print.PSPrinterJob
    java.class.path = .
    java.class.version = 52.0
    java.endorsed.dirs = /home/dcuser/.miniconda3/jre/lib/endorsed
    java.ext.dirs = /home/dcuser/.miniconda3/jre/lib/ext
        /usr/java/packages/lib/ext
    java.home = /home/dcuser/.miniconda3/jre
    java.io.tmpdir = /tmp
    java.library.path = /usr/java/packages/lib/amd64
        /usr/lib64
        /lib64
        /lib
        /usr/lib
    java.runtime.name = OpenJDK Runtime Environment
    java.runtime.version = 1.8.0_152-release-1056-b12
    java.specification.name = Java Platform API Specification
    java.specification.vendor = Oracle Corporation
    java.specification.version = 1.8
    java.vendor = JetBrains s.r.o
    java.vendor.url = https://www.jetbrains.com/
    java.vendor.url.bug = https://youtrack.jetbrains.com
    java.version = 1.8.0_152-release
    java.vm.info = mixed mode
    java.vm.name = OpenJDK 64-Bit Server VM
    java.vm.specification.name = Java Virtual Machine Specification
    java.vm.specification.vendor = Oracle Corporation
    java.vm.specification.version = 1.8
    java.vm.vendor = JetBrains s.r.o
    java.vm.version = 25.152-b12
    line.separator = \n 
    os.arch = amd64
    os.name = Linux
    os.version = 3.13.0-48-generic
    path.separator = :
    sun.arch.data.model = 64
    sun.boot.class.path = /home/dcuser/.miniconda3/jre/lib/resources.jar
        /home/dcuser/.miniconda3/jre/lib/rt.jar
        /home/dcuser/.miniconda3/jre/lib/sunrsasign.jar
        /home/dcuser/.miniconda3/jre/lib/jsse.jar
        /home/dcuser/.miniconda3/jre/lib/jce.jar
        /home/dcuser/.miniconda3/jre/lib/charsets.jar
        /home/dcuser/.miniconda3/jre/lib/jfr.jar
        /home/dcuser/.miniconda3/jre/classes
    sun.boot.library.path = /home/dcuser/.miniconda3/jre/lib/amd64
    sun.cpu.endian = little
    sun.cpu.isalist = 
    sun.io.unicode.encoding = UnicodeLittle
    sun.java.launcher = SUN_STANDARD
    sun.jnu.encoding = UTF-8
    sun.management.compiler = HotSpot 64-Bit Tiered Compilers
    sun.os.patch.level = unknown
    user.country = US
    user.dir = /home/dcuser/.backup/untrimmed_fastq
    user.home = /home/dcuser
    user.language = en
    user.name = dcuser
    user.timezone = 

openjdk version "1.8.0_152-release"
OpenJDK Runtime Environment (build 1.8.0_152-release-1056-b12)
OpenJDK 64-Bit Server VM (build 25.152-b12, mixed mode)