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JetBrains-Research / pubtrends

Scientific literature explorer. Runs a Pubmed or Semantic Scholar search and allows user to explore high-level structure of result papers
Apache License 2.0
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Exception during paper analysis #248

Closed olegs closed 3 years ago

olegs commented 3 years ago 
[2021-03-09 23:14:51,748: ERROR/ForkPoolWorker-2] Task analyze_id_list[dada78ef-531e-4ed8-9668-58c5b5e61358] raised unexpected: KeyError('total')
Traceback (most recent call last):
  File "/home/user/miniconda3/envs/pubtrends/lib/python3.8/site-packages/pandas/core/indexes/base.py", line 2646, in get_loc
    return self._engine.get_loc(key)
  File "pandas/_libs/index.pyx", line 111, in pandas._libs.index.IndexEngine.get_loc
  File "pandas/_libs/index.pyx", line 138, in pandas._libs.index.IndexEngine.get_loc
  File "pandas/_libs/hashtable_class_helper.pxi", line 1619, in pandas._libs.hashtable.PyObjectHashTable.get_item
  File "pandas/_libs/hashtable_class_helper.pxi", line 1627, in pandas._libs.hashtable.PyObjectHashTable.get_item
KeyError: 'total'

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/home/user/miniconda3/envs/pubtrends/lib/python3.8/site-packages/celery/app/trace.py", line 385, in trace_task
    R = retval = fun(*args, **kwargs)
  File "/home/user/miniconda3/envs/pubtrends/lib/python3.8/site-packages/celery/app/trace.py", line 650, in __protected_call__
    return self.run(*args, **kwargs)
  File "/home/user/pysrc/celery/tasks_main.py", line 76, in analyze_id_list
    analyzer.analyze_papers(ids, query, task=current_task)
  File "/home/user/pysrc/papers/analyzer.py", line 290, in analyze_papers
    bibliographic_coupling_df['total'] >= self.SIMILARITY_BIBLIOGRAPHIC_COUPLING_MIN].copy()
  File "/home/user/miniconda3/envs/pubtrends/lib/python3.8/site-packages/pandas/core/frame.py", line 2800, in __getitem__
    indexer = self.columns.get_loc(key)
  File "/home/user/miniconda3/envs/pubtrends/lib/python3.8/site-packages/pandas/core/indexes/base.py", line 2648, in get_loc
    return self._engine.get_loc(self._maybe_cast_indexer(key))
  File "pandas/_libs/index.pyx", line 111, in pandas._libs.index.IndexEngine.get_loc
  File "pandas/_libs/index.pyx", line 138, in pandas._libs.index.IndexEngine.get_loc
  File "pandas/_libs/hashtable_class_helper.pxi", line 1619, in pandas._libs.hashtable.PyObjectHashTable.get_item
  File "pandas/_libs/hashtable_class_helper.pxi", line 1627, in pandas._libs.hashtable.PyObjectHashTable.get_item
KeyError: 'total'