issues
search
JetBrains-Research
/
span
SPAN Semi-supervised Peak Analyzer
https://doi.org/10.1093/bioinformatics/btab376
MIT License
9
stars
1
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Estimate single signal / noise density for genome, chromosome independent
#44
olegs
closed
4 months ago
0
Ignore contigs when coverage distribution is different from genome-wise
#43
olegs
opened
5 months ago
1
Drosophila chromosomes ignored
#42
AlePur
closed
5 months ago
3
Cleanup cache files, when model is not saved explicitly
#41
olegs
closed
7 months ago
1
Use fake process cancelled in order not affect tests
#40
iromeo
closed
11 months ago
0
Update examples with latest version 1.1.5628
#39
olegs
closed
1 year ago
0
SPAN doesn't honor --threads setting
#38
olegs
closed
10 months ago
1
Will SPAN use paired-end BAM files?
#37
evangeloo
closed
2 years ago
2
Mixture
#36
olegs
closed
2 years ago
0
Error during islands computation
#35
olegs
closed
2 years ago
0
Wrong correlation between pvalues
#34
olegs
closed
2 years ago
2
Build instructions
#33
maxim-h
closed
1 year ago
11
Stoffer-Liptak test produces Nan
#32
olegs
closed
2 years ago
0
Update SPAN Galaxy package
#31
olegs
closed
1 year ago
1
Cleanup log file format
#30
olegs
closed
4 years ago
1
Inconsistent LOG format in output
#29
olegs
closed
4 years ago
0
Multi-sample labelling
#28
jessakay
closed
4 years ago
2
NPE
#27
olegs
closed
4 years ago
1
Remove optional model with additional covariates from SPAN cli
#26
olegs
closed
4 years ago
3
Do not fail on unknown chromosomes in labels file
#25
olegs
opened
4 years ago
0
how to cite span?
#23
clouds-drift
closed
4 years ago
3
Improving Span, or Span 2
#22
dievsky
closed
4 years ago
6
Upgrade to big 0.9.0
#21
dievsky
closed
5 years ago
0
bigwig is not supported as advertised?
#20
clouds-drift
closed
5 years ago
3
SPAN output is confusing during model tuning
#19
olegs
closed
5 years ago
2
Model fit failed
#18
EllieDuan
closed
5 years ago
6
Fix different layout of long ints
#17
olegs
closed
5 years ago
0
Span peak scores
#16
dievsky
closed
5 years ago
4
Span doesn't calculate the peak value
#15
dievsky
closed
5 years ago
3
Span issue 9
#14
dievsky
closed
5 years ago
0
Don't invoke SpanCLA.main in tests
#13
dievsky
closed
1 year ago
0
WARNING Unable to create a system terminal
#12
olegs
closed
5 years ago
2
Improve SPAN model convergence prediction ETA
#11
olegs
closed
5 years ago
0
"BIN is ignored" when it's not
#10
dievsky
closed
5 years ago
0
Allow Span CLA to call and tune peaks with just the model file present
#9
dievsky
closed
5 years ago
7
Span custom model
#3
dievsky
closed
5 years ago
1
Invalid coverage caches: fail or recreate?
#2
dievsky
closed
5 years ago
6
Double hash in model name
#1
olegs
closed
5 years ago
0
Publish SPAN to bioconda
#4
olegs
opened
5 years ago
2
Make Span file logging always set to DEBUG level
#5
dievsky
closed
5 years ago
2
Allow custom Span model names
#6
dievsky
closed
5 years ago
9
Span and Java heap space
#7
dievsky
closed
10 months ago
4
SPAN ignores chromosome alternative contigs
#8
iromeo
closed
5 years ago
3