rsv-genotype

auspice folder is used for nextstrain depoly via community

https://nextstrain.org/community/JianiC/rsv-genotype/

Reference: Hadfield, J. et al. NextStrain: Real-time tracking of pathogen evolution. Bioinformatics 34, 4121–4123 (2018)

LABEL folder is a customized RSV genotype classification module

Instruction to install LABEL-rsv module

Reference: Shepard, S. S. et al. LABEL: Fast and Accurate Lineage Assignment with Assessment of H5N1 and H9N2 Influenza A Hemagglutinins. PLoS One 9, e86921 (2014)