JihedC Snakemake_ATAC_2020 issues - Githubissues

JihedC / Snakemake_ATAC_2020

Repository for Jianhui's snakemake pipeline

MIT License

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Change name of launcher

#14 JihedC closed 3 years ago
1
HMMRATAC command line produced outputs in the current directory

#13 WJH58 opened 3 years ago
0
HMMRATAC_V1.2.10_exe.jar is not downloaded before runnning hmmratac rule

#12 WJH58 closed 3 years ago
4
Pipeline not working on dev branch

#11 JihedC opened 3 years ago
9
Rule deduplication doesn't remove duplicates

#10 WJH58 closed 3 years ago
1
Pipeline not downloading the Gene_gtf

#9 JihedC closed 3 years ago
5
HMMRATAC is not downloaded by the pipeline

#8 JihedC closed 3 years ago
1
Add message for each rule to increase clarity

#7 JihedC closed 3 years ago
4
Add annotation of the peaks with Homer

#6 JihedC closed 3 years ago
9
Add MultiQC

#5 JihedC closed 3 years ago
4
Coverage over other bed files

#4 JihedC opened 3 years ago
2
Include documentation for the pipeline

#3 JihedC closed 3 years ago
12
Add parameters of deeptools to the configuration file

#2 JihedC closed 3 years ago
5
Include more Deeptools tool

#1 JihedC closed 3 years ago
5