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JinmiaoChenLab / ezSingleCell2

GNU General Public License v3.0
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install issues standalone server #1

Open JoelHaas opened 3 months ago

JoelHaas commented 3 months ago

Thank you for sharing this interesting project! I was looking to install to run from our local server for a lab installation and when I try to start the server after install, it immediately throws an error in the R terminal: "The 'name' provided ('hand-o-right") does not correspond to a known icon." This error is repeated ~30 lines and finishes with

However, the webpage stays open and I tried starting an analysis of scRNAseq. After clicking on the 'upload your data' link, the webpage fails and gives an 'Address not found' and the R terminal gives two errors from plotly (No trace type specified and no positional attributes specified). I am in ubuntu using R 4.4.1.

Could you post a sessionInfo result that I could try to compare why it's not working?

KarlKaise commented 3 months ago

I also want to report a problem with standalone lab installation:

I cannot run Celltypist or CellID analysis. Each generating different errors, which I am happy to share but I am wondering if you might have tried it yourself?

Also just reporting, the website doesnt work for last 24 hours.

Thanks for any help.

KarlKaise commented 3 months ago

This is for example message if I try to run CellID:

Warning in gzfile(file, "rb") : cannot open compressed file 'ref.rds', probable reason 'No such file or directory' Warning: Error in gzfile: cannot open the connection

huyibo124 commented 3 months ago

I encountered the same error.

I found the cause was this line in server.R: "ref = readRDS('ref.rds')".

But I don't know where to download this reference file named 'ref.rds', it might be a data.frame.