[PRE REVIEW]: Pigeons.jl: Distributed sampling from intractable distributions

[whedon]

Submitting author: @nikola-sur (Nikola Surjanovic) Repository: https://github.com/Julia-Tempering/Pigeons-Paper Version: Editor: @pitsianis Reviewers: @nsailor, @georgebisbas Managing EiC: Mathieu Besançon

Author instructions

Thanks for submitting your paper to JCON @nikola-sur. Currently, there isn't an JCON editor assigned to your paper.

The author's suggestion for the handling editor is @pitsianis.

@nikola-sur if you have any suggestions for potential reviewers then please mention them here in this thread (without tagging them with an @). In addition, this list of people have already agreed to review for JCON and may be suitable for this submission (please start at the bottom of the list).

Editor instructions

The JCON submission bot @whedon is here to help you find and assign reviewers and start the main review. To find out what @whedon can do for you type:

@whedon commands

[whedon]

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@whedon commands

For example, to regenerate the paper pdf after making changes in the paper's md or bib files, type:

@whedon generate pdf

[whedon]

Failed to discover a Statement of need section in paper

[whedon]

Wordcount for paper.tex is 278

[whedon]

Software report (experimental):

github.com/AlDanial/cloc v 1.88  T=0.04 s (809.0 files/s, 161022.2 lines/s)
-------------------------------------------------------------------------------
Language                     files          blank        comment           code
-------------------------------------------------------------------------------
TeX                             16            520            361           4393
Julia                           10             55             45            298
Ruby                             1              8              4             45
YAML                             1              1              0             30
TOML                             1              0              0             12
-------------------------------------------------------------------------------
SUM:                            29            584            410           4778
-------------------------------------------------------------------------------

Statistical information for the repository 'beac6c9c6fad6941d723d437' was
gathered on 2023/10/30.
The following historical commit information, by author, was found:

Author                     Commits    Insertions      Deletions    % of changes
Nikola Surjanovic                1            57              0          100.00

Below are the number of rows from each author that have survived and are still
intact in the current revision:

Author                     Rows      Stability          Age       % in comments
Nikola Surjanovic            57          100.0          0.0                7.02

[whedon]

PDF failed to compile for issue #136 with the following error:

 Latexmk: This is Latexmk, John Collins, 17 Jan. 2018, version: 4.55.
Rule 'pdflatex': Rules & subrules not known to be previously run:
   pdflatex
Rule 'pdflatex': The following rules & subrules became out-of-date:
      'pdflatex'
------------
Run number 1 of rule 'pdflatex'
------------
------------
Running 'pdflatex  -recorder  "paper.tex"'
------------
===========Latexmk: Missing input file: 'xifthen.sty' from line
  '! LaTeX Error: File `xifthen.sty' not found.'
Latexmk: Missing input file: 'xifthen.sty' from line
  '! LaTeX Error: File `xifthen.sty' not found.'
Failure to make 'paper.pdf'
Collected error summary (may duplicate other messages):
  pdflatex: Command for 'pdflatex' gave return code 1
      Refer to 'paper.log' for details
Looks like we failed to compile the PDF

[whedon]

Failed to discover a valid open source license.

[whedon]

Reference check summary (note 'MISSING' DOIs are suggestions that need verification):

OK DOIs

- None

MISSING DOIs

- 10.1137/141000671 may be a valid DOI for title: Julia: A fresh approach to numerical computing
- 10.1111/rssb.12464 may be a valid DOI for title: Non-reversible parallel tempering: a scalable highly parallel MCMC scheme
- 10.1007/s11222-012-9328-6 may be a valid DOI for title: Likelihood-free parallel tempering
- 10.2307/2348941 may be a valid DOI for title: A language and program for complex Bayesian modelling
- 10.1093/sysbio/syt022 may be a valid DOI for title: PhyloBayes MPI: phylogenetic reconstruction with infinite mixtures of profiles in a parallel environment
- 10.1016/j.cma.2021.114264 may be a valid DOI for title: Korali: Efficient and scalable software framework for Bayesian uncertainty quantification and stochastic optimization
- 10.1615/int.j.uncertaintyquantification.2022038478 may be a valid DOI for title: Hamiltonian Monte Carlo in inverse problems; Ill-conditioning and multimodality
- 10.1038/s41467-022-31830-2 may be a valid DOI for title: Accurate determination of CRISPR-mediated gene fitness in transplantable tumours
- 10.1145/3314221.3314642 may be a valid DOI for title: Gen: a general-purpose probabilistic programming system with programmable inference
- 10.2307/2684568 may be a valid DOI for title: Understanding the Metropolis-Hastings algorithm
- 10.21105/joss.02741 may be a valid DOI for title: ParaMonte: A high-performance serial/parallel Monte Carlo simulation library for C, C++, Fortran
- 10.1186/s12918-017-0433-1 may be a valid DOI for title: Comprehensive benchmarking of Markov chain Monte Carlo methods for dynamical systems
- 10.1103/physrevlett.57.2607 may be a valid DOI for title: Replica Monte Carlo simulation of spin-glasses
- 10.1111/rssb.12464 may be a valid DOI for title: Non-reversible parallel tempering: a scalable highly parallel MCMC scheme
- 10.1002/sim.3680 may be a valid DOI for title: The BUGS project: evolution, critique and future directions
- 10.1093/bioinformatics/17.8.754 may be a valid DOI for title: MRBAYES: Bayesian inference of phylogenetic trees
- 10.1093/sysbio/sys029 may be a valid DOI for title: MrBayes 3.2: efficient Bayesian phylogenetic inference and model choice across a large model space
- 10.1109/wisp.2007.4447579 may be a valid DOI for title: Large scale Bayesian data analysis for nuclear fusion experiments
- 10.1007/s11222-008-9110-y may be a valid DOI for title: A tutorial on adaptive MCMC
- 10.3390/galaxies11010006 may be a valid DOI for title: The ngEHT’s Role in Measuring Supermassive Black Hole Spins
- 10.3847/1538-4357/ac09ee may be a valid DOI for title: Observing the Inner Shadow of a Black Hole: A Direct View of the Event Horizon
- 10.21105/joss.04457 may be a valid DOI for title: Comrade: Composable Modeling of Radio Emission
- 10.1198/106186006x100579 may be a valid DOI for title: Parallel Markov chain Monte Carlo simulation by pre-fetching
- 10.1198/jcgs.2010.10039 may be a valid DOI for title: On the utility of graphics cards to perform massively parallel simulation of advanced Monte Carlo methods
- 10.1198/jcgs.2011.10167 may be a valid DOI for title: Using parallel computation to improve independent Metropolis–Hastings based estimation
- 10.1073/pnas.1408184111 may be a valid DOI for title: A general construction for parallelizing Metropolis-Hastings algorithms
- 10.4324/9781003289173-2 may be a valid DOI for title: Bayes and big data: the consensus Monte Carlo algorithm
- 10.1111/rssb.12336 may be a valid DOI for title: Unbiased Markov chain Monte Carlo methods with couplings
- 10.1145/62959.62969 may be a valid DOI for title: Efficient and Portable Combined Random Number Generators
- 10.1145/2714064.2660195 may be a valid DOI for title: Fast splittable pseudorandom number generators
- 10.1080/01621459.1990.10474918 may be a valid DOI for title: Density estimation with confidence sets exemplified by superclusters and voids in the galaxies
- 10.1093/sysbio/syq085 may be a valid DOI for title: Improving marginal likelihood estimation for Bayesian phylogenetic model selection
- 10.21105/joss.01816 may be a valid DOI for title: OnlineStats.jl: A Julia package for statistics on data streams
- 10.1145/3551624.3555300 may be a valid DOI for title: Mathematically quantifying non-responsiveness of the 2021 Georgia congressional districting plan

INVALID DOIs

- None

[nikola-sur]

@whedon commands

[whedon]

Here are some things you can ask me to do:

# List Whedon's capabilities
@whedon commands

# List of editor GitHub usernames
@whedon list editors

# List of reviewers together with programming language preferences and domain expertise
@whedon list reviewers

EDITORIAL TASKS

# Compile the paper
@whedon generate pdf

# Compile the paper from alternative branch
@whedon generate pdf from branch custom-branch-name

# Ask Whedon to check the references for missing DOIs
@whedon check references

# Ask Whedon to check repository statistics for the submitted software
@whedon check repository

[nikola-sur]

@whedon list reviewers

[whedon]

Here's the current list of reviewers: http://bit.ly/2V9GSFq

[nikola-sur]

@whedon list editors

[whedon]

Current editors:

@arfon
@carstenbauer
@fcdimitr
@lucaferranti
@luraess
@matbesancon
@odow
@pitsianis
@ranjanan
@vchuravy

[nikola-sur]

@whedon assign @pitsianis as editor

[whedon]

I'm sorry @nikola-sur, I'm afraid I can't do that. That's something only editors are allowed to do.

[nikola-sur]

@whedon generate pdf

[whedon]

PDF failed to compile for issue #136 with the following error:

 Latexmk: This is Latexmk, John Collins, 17 Jan. 2018, version: 4.55.
Rule 'pdflatex': Rules & subrules not known to be previously run:
   pdflatex
Rule 'pdflatex': The following rules & subrules became out-of-date:
      'pdflatex'
------------
Run number 1 of rule 'pdflatex'
------------
------------
Running 'pdflatex  -recorder  "paper.tex"'
------------
===========Latexmk: Missing input file: 'xifthen.sty' from line
  '! LaTeX Error: File `xifthen.sty' not found.'
Latexmk: Missing input file: 'xifthen.sty' from line
  '! LaTeX Error: File `xifthen.sty' not found.'
Failure to make 'paper.pdf'
Collected error summary (may duplicate other messages):
  pdflatex: Command for 'pdflatex' gave return code 1
      Refer to 'paper.log' for details
Looks like we failed to compile the PDF

[nikola-sur]

@whedon generate pdf

[whedon]

PDF failed to compile for issue #136 with the following error:

 Latexmk: This is Latexmk, John Collins, 17 Jan. 2018, version: 4.55.
Rule 'pdflatex': Rules & subrules not known to be previously run:
   pdflatex
Rule 'pdflatex': The following rules & subrules became out-of-date:
      'pdflatex'
------------
Run number 1 of rule 'pdflatex'
------------
------------
Running 'pdflatex  -recorder  "paper.tex"'
------------
===========Latexmk: Missing input file: 'ifmtarg.sty' from line
  '! LaTeX Error: File `ifmtarg.sty' not found.'
Latexmk: Missing input file: 'ifmtarg.sty' from line
  '! LaTeX Error: File `ifmtarg.sty' not found.'
Failure to make 'paper.pdf'
Collected error summary (may duplicate other messages):
  pdflatex: Command for 'pdflatex' gave return code 1
      Refer to 'paper.log' for details
Looks like we failed to compile the PDF

[nikola-sur]

@whedon generate pdf

[whedon]

PDF failed to compile for issue #136 with the following error:

 Latexmk: This is Latexmk, John Collins, 17 Jan. 2018, version: 4.55.
Rule 'pdflatex': Rules & subrules not known to be previously run:
   pdflatex
Rule 'pdflatex': The following rules & subrules became out-of-date:
      'pdflatex'
------------
Run number 1 of rule 'pdflatex'
------------
------------
Running 'pdflatex  -recorder  "paper.tex"'
------------
===========Latexmk: Missing input file: 'dsfont.sty' from line
  '! LaTeX Error: File `dsfont.sty' not found.'
Latexmk: Missing input file: 'dsfont.sty' from line
  '! LaTeX Error: File `dsfont.sty' not found.'
Failure to make 'paper.pdf'
Collected error summary (may duplicate other messages):
  pdflatex: Command for 'pdflatex' gave return code 1
      Refer to 'paper.log' for details
Looks like we failed to compile the PDF

[nikola-sur]

@whedon generate pdf

[whedon]

PDF failed to compile for issue #136 with the following error:

 Latexmk: This is Latexmk, John Collins, 17 Jan. 2018, version: 4.55.
Rule 'pdflatex': Rules & subrules not known to be previously run:
   pdflatex
Rule 'pdflatex': The following rules & subrules became out-of-date:
      'pdflatex'
------------
Run number 1 of rule 'pdflatex'
------------
------------
Running 'pdflatex  -recorder  "paper.tex"'
------------
===========Latexmk: Missing input file: 'nicefrac.sty' from line
  '! LaTeX Error: File `nicefrac.sty' not found.'
Latexmk: Missing input file: 'nicefrac.sty' from line
  '! LaTeX Error: File `nicefrac.sty' not found.'
Failure to make 'paper.pdf'
Collected error summary (may duplicate other messages):
  pdflatex: Command for 'pdflatex' gave return code 1
      Refer to 'paper.log' for details
Looks like we failed to compile the PDF

[nikola-sur]

@whedon generate pdf

[whedon]

PDF failed to compile for issue #136 with the following error:

 Latexmk: This is Latexmk, John Collins, 17 Jan. 2018, version: 4.55.
Rule 'pdflatex': Rules & subrules not known to be previously run:
   pdflatex
Rule 'pdflatex': The following rules & subrules became out-of-date:
      'pdflatex'
------------
Run number 1 of rule 'pdflatex'
------------
------------
Running 'pdflatex  -recorder  "paper.tex"'
------------
===========Latexmk: Missing input file: 'bbm.sty' from line
  '! LaTeX Error: File `bbm.sty' not found.'
Latexmk: Missing input file: 'bbm.sty' from line
  '! LaTeX Error: File `bbm.sty' not found.'
Failure to make 'paper.pdf'
Collected error summary (may duplicate other messages):
  pdflatex: Command for 'pdflatex' gave return code 1
      Refer to 'paper.log' for details
Looks like we failed to compile the PDF

[nikola-sur]

@whedon generate pdf

[whedon]

PDF failed to compile for issue #136 with the following error:

 Latexmk: This is Latexmk, John Collins, 17 Jan. 2018, version: 4.55.
Rule 'pdflatex': Rules & subrules not known to be previously run:
   pdflatex
Rule 'pdflatex': The following rules & subrules became out-of-date:
      'pdflatex'
------------
Run number 1 of rule 'pdflatex'
------------
------------
Running 'pdflatex  -recorder  "paper.tex"'
------------
===========Latexmk: Missing input file: 'mathtools.sty' from line
  '! LaTeX Error: File `mathtools.sty' not found.'
Latexmk: Missing input file: 'mathtools.sty' from line
  '! LaTeX Error: File `mathtools.sty' not found.'
Failure to make 'paper.pdf'
Collected error summary (may duplicate other messages):
  pdflatex: Command for 'pdflatex' gave return code 1
      Refer to 'paper.log' for details
Looks like we failed to compile the PDF

[nikola-sur]

@whedon generate pdf

[whedon]

PDF failed to compile for issue #136 with the following error:

 Latexmk: This is Latexmk, John Collins, 17 Jan. 2018, version: 4.55.
Rule 'pdflatex': Rules & subrules not known to be previously run:
   pdflatex
Rule 'pdflatex': The following rules & subrules became out-of-date:
      'pdflatex'
------------
Run number 1 of rule 'pdflatex'
------------
------------
Running 'pdflatex  -recorder  "paper.tex"'
------------
===========Latexmk: Missing input file: 'mhsetup.sty' from line
  '! LaTeX Error: File `mhsetup.sty' not found.'
Latexmk: Missing input file: 'mhsetup.sty' from line
  '! LaTeX Error: File `mhsetup.sty' not found.'
Failure to make 'paper.pdf'
Collected error summary (may duplicate other messages):
  pdflatex: Command for 'pdflatex' gave return code 1
      Refer to 'paper.log' for details
Looks like we failed to compile the PDF

[nikola-sur]

@whedon generate pdf

[whedon]

PDF failed to compile for issue #136 with the following error:

 Latexmk: This is Latexmk, John Collins, 17 Jan. 2018, version: 4.55.
Rule 'pdflatex': Rules & subrules not known to be previously run:
   pdflatex
Rule 'pdflatex': The following rules & subrules became out-of-date:
      'pdflatex'
------------
Run number 1 of rule 'pdflatex'
------------
------------
Running 'pdflatex  -recorder  "paper.tex"'
------------
===========Latexmk: Missing input file: 'cleveref.sty' from line
  '! LaTeX Error: File `cleveref.sty' not found.'
Latexmk: Missing input file: 'cleveref.sty' from line
  '! LaTeX Error: File `cleveref.sty' not found.'
Failure to make 'paper.pdf'
Collected error summary (may duplicate other messages):
  pdflatex: Command for 'pdflatex' gave return code 1
      Refer to 'paper.log' for details
Looks like we failed to compile the PDF

[nikola-sur]

@whedon generate pdf

[whedon]

PDF failed to compile for issue #136 with the following error:

 Latexmk: This is Latexmk, John Collins, 17 Jan. 2018, version: 4.55.
Rule 'pdflatex': Rules & subrules not known to be previously run:
   pdflatex
Rule 'pdflatex': The following rules & subrules became out-of-date:
      'pdflatex'
------------
Run number 1 of rule 'pdflatex'
------------
------------
Running 'pdflatex  -recorder  "paper.tex"'
------------
===========Latexmk: Missing input file: 'crossreftools.sty' from line
  '! LaTeX Error: File `crossreftools.sty' not found.'
Latexmk: Missing input file: 'crossreftools.sty' from line
  '! LaTeX Error: File `crossreftools.sty' not found.'
Failure to make 'paper.pdf'
Collected error summary (may duplicate other messages):
  pdflatex: Command for 'pdflatex' gave return code 1
      Refer to 'paper.log' for details
Looks like we failed to compile the PDF

[nikola-sur]

@whedon generate pdf

[whedon]

PDF failed to compile for issue #136 with the following error:

 Latexmk: This is Latexmk, John Collins, 17 Jan. 2018, version: 4.55.
Rule 'pdflatex': Rules & subrules not known to be previously run:
   pdflatex
Rule 'pdflatex': The following rules & subrules became out-of-date:
      'pdflatex'
------------
Run number 1 of rule 'pdflatex'
------------
------------
Running 'pdflatex  -recorder  "paper.tex"'
------------
===========Latexmk: Missing input file: 'import.sty' from line
  '! LaTeX Error: File `import.sty' not found.'
Latexmk: Missing input file: 'import.sty' from line
  '! LaTeX Error: File `import.sty' not found.'
Failure to make 'paper.pdf'
Collected error summary (may duplicate other messages):
  pdflatex: Command for 'pdflatex' gave return code 1
      Refer to 'paper.log' for details
Looks like we failed to compile the PDF

[nikola-sur]

@whedon generate pdf

[whedon]

PDF failed to compile for issue #136 with the following error:

 Latexmk: This is Latexmk, John Collins, 17 Jan. 2018, version: 4.55.
Rule 'pdflatex': Rules & subrules not known to be previously run:
   pdflatex
Rule 'pdflatex': The following rules & subrules became out-of-date:
      'pdflatex'
------------
Run number 1 of rule 'pdflatex'
------------
------------
Running 'pdflatex  -recorder  "paper.tex"'
------------
Failure to make 'paper.pdf'
Collected error summary (may duplicate other messages):
  pdflatex: Command for 'pdflatex' gave return code 1
      Refer to 'paper.log' for details
Looks like we failed to compile the PDF

[nikola-sur]

@whedon generate pdf

[whedon]

PDF failed to compile for issue #136 with the following error:

 Latexmk: This is Latexmk, John Collins, 17 Jan. 2018, version: 4.55.
Rule 'pdflatex': Rules & subrules not known to be previously run:
   pdflatex
Rule 'pdflatex': The following rules & subrules became out-of-date:
      'pdflatex'
------------
Run number 1 of rule 'pdflatex'
------------
------------
Running 'pdflatex  -recorder  "paper.tex"'
------------
Failure to make 'paper.pdf'
Collected error summary (may duplicate other messages):
  pdflatex: Command for 'pdflatex' gave return code 1
      Refer to 'paper.log' for details
Looks like we failed to compile the PDF

[nikola-sur]

@whedon generate pdf

[whedon]

PDF failed to compile for issue #136 with the following error:

 Latexmk: This is Latexmk, John Collins, 17 Jan. 2018, version: 4.55.
Rule 'pdflatex': Rules & subrules not known to be previously run:
   pdflatex
Rule 'pdflatex': The following rules & subrules became out-of-date:
      'pdflatex'
------------
Run number 1 of rule 'pdflatex'
------------
------------
Running 'pdflatex  -recorder  "paper.tex"'
------------
Failure to make 'paper.pdf'
Collected error summary (may duplicate other messages):
  pdflatex: Command for 'pdflatex' gave return code 1
      Refer to 'paper.log' for details
Looks like we failed to compile the PDF

[pitsianis]

@wendon assign @pitsianis as editor

[nikola-sur]

@whedon check references

[whedon]

Reference check summary (note 'MISSING' DOIs are suggestions that need verification):

OK DOIs

- 10.1137/141000671 is OK

MISSING DOIs

- 10.1111/rssb.12464 may be a valid DOI for title: Non-reversible parallel tempering: a scalable highly parallel MCMC scheme
- 10.1007/s11222-012-9328-6 may be a valid DOI for title: Likelihood-free parallel tempering
- 10.2307/2348941 may be a valid DOI for title: A language and program for complex Bayesian modelling
- 10.1093/sysbio/syt022 may be a valid DOI for title: PhyloBayes MPI: phylogenetic reconstruction with infinite mixtures of profiles in a parallel environment
- 10.1016/j.cma.2021.114264 may be a valid DOI for title: Korali: Efficient and scalable software framework for Bayesian uncertainty quantification and stochastic optimization
- 10.1615/int.j.uncertaintyquantification.2022038478 may be a valid DOI for title: Hamiltonian Monte Carlo in inverse problems; Ill-conditioning and multimodality
- 10.1038/s41467-022-31830-2 may be a valid DOI for title: Accurate determination of CRISPR-mediated gene fitness in transplantable tumours
- 10.1145/3314221.3314642 may be a valid DOI for title: Gen: a general-purpose probabilistic programming system with programmable inference
- 10.2307/2684568 may be a valid DOI for title: Understanding the Metropolis-Hastings algorithm
- 10.21105/joss.02741 may be a valid DOI for title: ParaMonte: A high-performance serial/parallel Monte Carlo simulation library for C, C++, Fortran
- 10.1186/s12918-017-0433-1 may be a valid DOI for title: Comprehensive benchmarking of Markov chain Monte Carlo methods for dynamical systems
- 10.1103/physrevlett.57.2607 may be a valid DOI for title: Replica Monte Carlo simulation of spin-glasses
- 10.1111/rssb.12464 may be a valid DOI for title: Non-reversible parallel tempering: a scalable highly parallel MCMC scheme
- 10.1093/bioinformatics/17.8.754 may be a valid DOI for title: MRBAYES: Bayesian inference of phylogenetic trees
- 10.1093/sysbio/sys029 may be a valid DOI for title: MrBayes 3.2: efficient Bayesian phylogenetic inference and model choice across a large model space
- 10.1109/wisp.2007.4447579 may be a valid DOI for title: Large scale Bayesian data analysis for nuclear fusion experiments
- 10.1007/s11222-008-9110-y may be a valid DOI for title: A tutorial on adaptive MCMC
- 10.3390/galaxies11010006 may be a valid DOI for title: The ngEHT’s Role in Measuring Supermassive Black Hole Spins
- 10.3847/1538-4357/ac09ee may be a valid DOI for title: Observing the Inner Shadow of a Black Hole: A Direct View of the Event Horizon
- 10.21105/joss.04457 may be a valid DOI for title: Comrade: Composable Modeling of Radio Emission
- 10.1198/106186006x100579 may be a valid DOI for title: Parallel Markov chain Monte Carlo simulation by pre-fetching
- 10.1198/jcgs.2010.10039 may be a valid DOI for title: On the utility of graphics cards to perform massively parallel simulation of advanced Monte Carlo methods
- 10.1198/jcgs.2011.10167 may be a valid DOI for title: Using parallel computation to improve independent Metropolis–Hastings based estimation
- 10.1073/pnas.1408184111 may be a valid DOI for title: A general construction for parallelizing Metropolis-Hastings algorithms
- 10.4324/9781003289173-2 may be a valid DOI for title: Bayes and big data: the consensus Monte Carlo algorithm
- 10.1111/rssb.12336 may be a valid DOI for title: Unbiased Markov chain Monte Carlo methods with couplings
- 10.1145/62959.62969 may be a valid DOI for title: Efficient and Portable Combined Random Number Generators
- 10.1145/2714064.2660195 may be a valid DOI for title: Fast splittable pseudorandom number generators
- 10.1080/01621459.1990.10474918 may be a valid DOI for title: Density estimation with confidence sets exemplified by superclusters and voids in the galaxies
- 10.1093/sysbio/syq085 may be a valid DOI for title: Improving marginal likelihood estimation for Bayesian phylogenetic model selection
- 10.21105/joss.01816 may be a valid DOI for title: OnlineStats.jl: A Julia package for statistics on data streams
- 10.1145/3551624.3555300 may be a valid DOI for title: Mathematically quantifying non-responsiveness of the 2021 Georgia congressional districting plan

INVALID DOIs

- None

[nikola-sur]

@whedon check references

[nikola-sur]

@whedon generate pdf

[whedon]

PDF failed to compile for issue #136 with the following error:

 Latexmk: This is Latexmk, John Collins, 17 Jan. 2018, version: 4.55.
Rule 'pdflatex': Rules & subrules not known to be previously run:
   pdflatex
Rule 'pdflatex': The following rules & subrules became out-of-date:
      'pdflatex'
------------
Run number 1 of rule 'pdflatex'
------------
------------
Running 'pdflatex  -recorder  "paper.tex"'
------------
Failure to make 'paper.pdf'
Collected error summary (may duplicate other messages):
  pdflatex: Command for 'pdflatex' gave return code 1
      Refer to 'paper.log' for details
Looks like we failed to compile the PDF

[whedon]

Reference check summary (note 'MISSING' DOIs are suggestions that need verification):

OK DOIs

- 10.1137/141000671 is OK
- 10.1007/s11222-012-9328-6 is OK
- 10.2307/2348941 is OK
- 10.1093/sysbio/syt022 is OK
- 10.1016/j.cma.2021.114264 is OK
- 10.1615/int.j.uncertaintyquantification.2022038478 is OK
- 10.1038/s41467-022-31830-2 is OK
- 10.1145/3314221.3314642 is OK
- 10.2307/2684568 is OK
- 10.21105/joss.02741 is OK
- 10.1186/s12918-017-0433-1 is OK
- 10.1103/physrevlett.57.2607 is OK
- 10.1111/rssb.12464 is OK
- 10.1093/bioinformatics/17.8.754 is OK
- 10.1093/sysbio/sys029 is OK
- 10.1109/wisp.2007.4447579 is OK
- 10.1007/s11222-008-9110-y is OK
- 10.3390/galaxies11010006 is OK
- 10.3847/1538-4357/ac09ee is OK
- 10.21105/joss.04457 is OK
- 10.1198/106186006x100579 is OK
- 10.1198/jcgs.2010.10039 is OK
- 10.1198/jcgs.2011.10167 is OK
- 10.1073/pnas.1408184111 is OK
- 10.4324/9781003289173-2 is OK
- 10.1111/rssb.12336 is OK
- 10.1145/62959.62969 is OK
- 10.1145/2714064.2660195 is OK
- 10.1080/01621459.1990.10474918 is OK
- 10.1093/sysbio/syq085 is OK
- 10.21105/joss.01816 is OK
- 10.1145/3551624.3555300 is OK

MISSING DOIs

- 10.1111/rssb.12464 may be a valid DOI for title: Non-reversible parallel tempering: a scalable highly parallel MCMC scheme

INVALID DOIs

- None

[nikola-sur]

@whedon generate pdf

[whedon]

PDF failed to compile for issue #136 with the following error:

 Latexmk: This is Latexmk, John Collins, 17 Jan. 2018, version: 4.55.
Rule 'pdflatex': Rules & subrules not known to be previously run:
   pdflatex
Rule 'pdflatex': The following rules & subrules became out-of-date:
      'pdflatex'
------------
Run number 1 of rule 'pdflatex'
------------
------------
Running 'pdflatex  -recorder  "paper.tex"'
------------
Failure to make 'paper.pdf'
Collected error summary (may duplicate other messages):
  pdflatex: Command for 'pdflatex' gave return code 1
      Refer to 'paper.log' for details
Looks like we failed to compile the PDF