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KCCG
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mity
mity: A highly sensitive mitochondrial variant analysis pipeline for whole genome sequencing data
MIT License
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application to non-model organisms
#57
dgs108
opened
1 week ago
3
raise ValueError("Missing these files: " + ",".join(missing_files)) ValueError: Missing these files: files
#56
Jyoti-Mridha
opened
1 month ago
1
UnicodeDecodeError: 'utf-8' codec can't decode byte 0x8b in position 1: invalid start byte
#55
Jyoti-Mridha
opened
1 month ago
1
Non-model references?
#54
chicopollo
closed
1 month ago
1
error mity call
#53
kowshal-al
closed
3 months ago
0
Release/1.1.0
#52
christianfares
closed
5 months ago
0
fixed names of chrm files in vcfanno-config-chrm
#51
trentzz
closed
5 months ago
0
added handling for excel sheetname lengths of greater than 31 chars + some auto-pylint formatting
#50
trentzz
closed
5 months ago
0
updated runall commands inline with new report changes
#49
trentzz
closed
5 months ago
0
Mity 37 Fix report
#48
christianfares
closed
5 months ago
0
Feature/mity 39 add other chr notations
#47
trentzz
closed
5 months ago
0
Hotfix/mity 37 handle report config file
#46
trentzz
closed
5 months ago
0
Added options for custom report and vcfanno config files and fixed searching for default files
#45
trentzz
closed
5 months ago
0
Annotation files with different chr notations
#44
RogueRussell
closed
5 months ago
4
report-config.yaml missing
#43
kkNGSKOCMG
closed
3 months ago
5
Added runall option to run mity call, normalise and report all in one go
#42
trentzz
closed
5 months ago
1
Added vcfanno to dockerfile
#41
trentzz
closed
6 months ago
0
Report Generation Invalid File Error
#40
james-lawlor
closed
5 months ago
4
Which version of Mitomap is mity using?
#39
anjalijain22
opened
8 months ago
1
Fixed pipeline service connection
#38
christianfares
closed
9 months ago
0
Update readme to show image
#37
christianfares
closed
9 months ago
0
Mity release prep
#36
christianfares
closed
9 months ago
0
Release/1.0.0
#35
christianfares
closed
9 months ago
0
Mity 34 prepare release
#34
christianfares
closed
10 months ago
0
Merge mity merge rewrite into development
#33
trentzz
closed
11 months ago
0
Problem running mity - undefined symbol __intel_sse2_strcpy
#32
rkabiljo
closed
5 months ago
2
Merge feature/mity 32 rewrite commands and add classes into development
#31
trentzz
closed
12 months ago
0
Merge mity report rewrite into development
#30
trentzz
closed
1 year ago
0
Changed mity normalise filter behaviour and removed tests
#29
trentzz
closed
1 year ago
0
added new line to _version.py
#28
trentzz
closed
1 year ago
0
Updated azure pipelines to edit setup.py and _version.py
#27
trentzz
closed
1 year ago
0
Merge new mity normalise into development
#26
trentzz
closed
1 year ago
0
Merge further cleanup to development
#25
trentzz
closed
1 year ago
0
Merge pipelines into development
#24
trentzz
closed
1 year ago
0
Merge cleanup and updated dependencies to development
#23
trentzz
closed
1 year ago
0
Azure pipelines
#22
trentzz
closed
1 year ago
0
cram for mm10
#21
AhmedArslan
closed
1 year ago
2
Creating a cohort / multisample VCF
#20
kvn95ss
closed
5 months ago
5
--region MT:1-500
#19
Pharmacogenetecist
closed
5 months ago
4
Error in gsort
#18
Pharmacogenetecist
closed
2 years ago
1
CRAM
#17
drmjc
closed
2 years ago
0
unable to find FASTA index entry for 'chrM'\n"
#16
vaishmanobala
closed
5 months ago
4
Fix interpretations in mitotip_score_fixed_del.csv
#15
anjalijain22
closed
2 years ago
1
Pathogenic variants labelled as likely benign by mity-report
#14
anjalijain22
closed
2 years ago
7
Variants of QUAL 0 have FILTER Value of PASS
#13
DarioS
closed
5 months ago
5
Mity merge - IndexError: list index out of range
#12
anjalijain22
closed
5 months ago
6
ZeroDivisionError: float division by zero
#11
zengyingying2015
closed
5 months ago
2
0.3.0 does not support hg38 aligned BAM file?
#10
nswh
closed
5 months ago
2
Issue running the Docker example
#9
moldach
closed
3 years ago
3
AsertionError in mity v0.2.1
#8
sjfandrews
closed
3 years ago
0
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