Changelog 3.1

[emilio-r]

Updated changelog for the upcoming 3.1 (#160) release, is there anything I'm forgetting or should rephrase?

[3.1.0] - In development

Added

• New profile for use on CTMR Gandalf, ctmr_gandalf.
• Taxonomic assessment of input reads by Kraken2.
• BACTpipe now supports building with Dockerimages.

Changed

• Renamed profile for CTMR-NAS to ctmr_nas to better conform to incoming profiles.
• Moved contig renaming script to shovill process from contamination screen process.
• Now publishes shovill.log in the output directory by default.
• Limited the search scope for MultiQC to minimize risk of process timeouts on HPC systems.
• Taxonomic screening made into an optional module. If a user wishes to make use of this, they must download a relevant Kraken2 database and specify its location with --kraken2_db.

Removed

• Removed contamination screening of assembled contigs by SendSketch.

[emilio-r]

I see that I was just a few moments too late with this @boulund 👍

[boulund]

Your text is better though! Seems we mentioned exactly the same things anyway :)