Open rduque1 opened 7 years ago
Hi,
The import_genomic_track
function internally uses the rtracklayer package (http://bioconductor.org/packages/release/bioc/html/rtracklayer.html) to parse genomic track file formats. In our experience, the parsing fails, if the file formats do not strictly adhere to the file format specifications. As a quick diagnosis, you can check whether you are able to import the bed file using rtracklayer.
Best, Chakri
Hi,
I transfromed using
plink
a 23andme file tobed
format, but when I try to get the genome build I get an error messageError: $ operator is invalid for atomic vectors
. To transform the 23andme file to bed I didplink --23file <23andmefile> --make-bed --out test3
I tried with another 23andme file too and got the same error. When I try with the example bed file on the homepage it works.