KarrLab datanator_rest_api issues

KarrLab / datanator_rest_api

A OAS3 compliant REST API for the Datanator integrated database

MIT License

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Extend gene data endpoints to gene identified via uniprot ids rather than via KEGG orthology ids

#85 jonrkarr closed 4 years ago
9
Add taxon distance parameters to `kinlaw_by_rxn` endpoint

#84 jonrkarr closed 4 years ago
1
Change endpoint .../protein_ranked_by_ko to .../gene_ranked_by_ko

#83 lzy7071 closed 4 years ago
1
Reaction kinetics endpoint is no longer working

#82 jonrkarr closed 4 years ago
9
Integrate rRNA and tRNA ortholog groups into the full text search for ko groups

#81 jonrkarr closed 4 years ago
8
Some gene search results have KEGG orthology id `nan`

#80 jonrkarr closed 4 years ago
7
What do the numbers mean in the taxonomic rank calculations?

#79 jonrkarr closed 4 years ago
2
Metabolite concentration queries with target species are failing

#78 jonrkarr closed 4 years ago
1
Some metabolite concentrations lack references

#77 jonrkarr closed 4 years ago
5
Some metabolite concentrations lack units

#76 jonrkarr closed 4 years ago
2
Tanimoto similarity is missing for some metabolites

#75 jonrkarr closed 4 years ago
2
Taxonomic distances are incorrect for same species in metabolite concentrations

#74 jonrkarr closed 4 years ago
5
Metabolite concentrations now seem to be repeated many times. Is this correct?

#73 jonrkarr closed 4 years ago
6
Add InchiKey information for Cofactors

#72 yosefdroth closed 4 years ago
2
Add taxonomic similarity to /metabolites/concentrations/similar_compounds/

#71 yosefdroth closed 4 years ago
4
Use `canon_anc_ids` and `canon_anc_names` to aggregate taxonomic distance information

#70 lzy7071 opened 4 years ago
1
Return information about the taxon/source associated with the metabolite localizations

#69 jonrkarr closed 4 years ago
2
Broaden scope of full text search

#68 jonrkarr closed 4 years ago
10
add metabolite name to metabolites/concentrations/similar_compounds/

#67 yosefdroth closed 4 years ago
1
Write endpoint to retrieve RNA modification data

#66 lzy7071 closed 4 years ago
8
remove `abundances` constraint on `/ftx/protein_ranked_by_ko`

#65 lzy7071 closed 4 years ago
1
Additional Data Returned in /metabolites/concentrations/?inchikey=

#64 yosefdroth closed 4 years ago
10
Inchi concentration calls not working for some metabolites

#63 yosefdroth closed 4 years ago
3
Genes section only returns proteins with abundances object

#62 lzy7071 closed 4 years ago
0
User interface for rna_modifications

#61 lzy7071 closed 4 years ago
1
Create endpoint in /metabolites that returns concentration values from newly incorporated primary sources

#60 lzy7071 closed 4 years ago
1
Some RNA calls to get_info_by_ko break from schema

#59 yosefdroth closed 4 years ago
1
Reaction shows up in Kegg related reactions but has no data in kinlaw_by_name

#58 yosefdroth closed 4 years ago
5
Create endpoint in /reactions that returns kinetic constants incorporated from BRENDA

#57 lzy7071 closed 4 years ago
1
Null ID in pH Distribution

#56 yosefdroth closed 4 years ago
5
Recommended metabolite concentration datasets

#55 jonrkarr closed 4 years ago
2
Certain Reaction Queries Show Up In Full Text Search but Cause Errors

#54 yosefdroth closed 4 years ago
1
Remove Unqouted NaN from RNA Queries

#53 yosefdroth closed 4 years ago
7
Create endpoint to calculate statistics about the database

#52 jonrkarr closed 4 years ago
1
Reaction API Not Returning Data When bound=tight

#51 yosefdroth closed 4 years ago
2
query rna mongo collection by ko

#50 lzy7071 closed 4 years ago
1
return RNA ftx results grouped by ko

#49 lzy7071 closed 4 years ago
1
RNA half life no longer working

#48 yosefdroth closed 4 years ago
1
Certain Reaction Queries Stopped Working

#47 yosefdroth closed 4 years ago
2
Create API in /reactions to return a list of reactions given kegg ortholog number

#46 lzy7071 closed 4 years ago
11
REST API has 503 errors

#45 jonrkarr closed 4 years ago
2
Deployment errors on Heroku

#44 lzy7071 closed 4 years ago
1
Debug metabolite concentration queries for some metabolites

#43 jonrkarr closed 4 years ago
1
Docs aren't displaying custom style

#42 jonrkarr closed 4 years ago
1
Slow endpoints

#41 lzy7071 closed 4 years ago
1
Better handle UniProt ID errors for protein abundance end point

#40 jonrkarr closed 4 years ago
1
Protein search results occasionally return non-sensical orthology groups with concatenated names

#39 jonrkarr closed 4 years ago
1
Add sequence similarity info to RNA and protein data queries to enable more fine-grained filtering of similarity

#38 jonrkarr closed 4 years ago
4
Add taxonomic distance information to reaction rate constants endpoint to enable taxonomic filtering

#37 jonrkarr closed 4 years ago
40
Add taxonomic distance information to RNA half life endpoint to enable taxonomic filtering

#36 jonrkarr closed 4 years ago
2

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