Closed xiasijian closed 3 weeks ago
@ekatsevi
Hi. No, sceptre
and Seurat
do not interoperate. sceptre
does not currently do clustering. Its focus is on gRNA assignment and gRNA-to-gene association testing. The goal of Seurat
mixscape is to remove ineffective perturbations (or cells that "escaped" perturbation). sceptre
does not currently have functionality for removing ineffective perturbations, but we hope to add such functionality in the near future. In summary sceptre
and Seurat
can be thought of as complementary packages.
Hi. No,
sceptre
andSeurat
do not interoperate.sceptre
does not currently do clustering. Its focus is on gRNA assignment and gRNA-to-gene association testing. The goal ofSeurat
mixscape is to remove ineffective perturbations (or cells that "escaped" perturbation).sceptre
does not currently have functionality for removing ineffective perturbations, but we hope to add such functionality in the near future. In summarysceptre
andSeurat
can be thought of as complementary packages.
Thanks a lot. Your interpretation is so distinct.
I am sorry that I am a beginner for perturb-seq, I want to know how I can use the result of sceptre for the input of seurat? Can the sceptre do clustering?