However, when running the code, I encountered the following error:
"Constructing negative control pairs.
Error in construct_negative_control_pairs_v2(sceptre_object = sceptre_object, :
No negative control pair passes pairwise QC."
After adjusting grna_integration_strategy = "singleton" to the default option, the code runs without issues. Could you please explain the potential reasons for this error? What adjustments can be made during the experiment and sequencing to avoid this error?
Your package has been extremely helpful!
However, when running the code, I encountered the following error:
"Constructing negative control pairs.
Error in construct_negative_control_pairs_v2(sceptre_object = sceptre_object, :
No negative control pair passes pairwise QC."
My original code is as follows:
After adjusting
grna_integration_strategy = "singleton"
to the default option, the code runs without issues. Could you please explain the potential reasons for this error? What adjustments can be made during the experiment and sequencing to avoid this error?