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Katsevich-Lab / sceptre

An R package for single-cell CRISPR screen data analysis emphasizing statistical rigor, massive scalability, and ease of use.
https://katsevich-lab.github.io/sceptre/
GNU General Public License v3.0
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could not find function "run_sceptre_highmoi_experimental" #40

Closed redbybeing closed 1 year ago

redbybeing commented 1 year ago

Hi,

This could be a silly question, but after reinstalling sceptre with

devtools::install_github("katsevich-lab/sceptre")
library(sceptre)

I get this error message:

could not find function "run_sceptre_highmoi_experimental" I am trying to run the new highmoi sceptre. Is there anything I'm missing to get the updated version?

timothy-barry commented 1 year ago

Hm. I'd recommend deleting your currently installed version of sceptre and then reinstalling. To do so, open R and then issue the command .libPaths(). Your output should look something like this: /Library/Frameworks/R.framework/Versions/4.2/Resources/library. Next, within terminal, cd to the above directory (i.e., cd /Library/Frameworks/R.framework/Versions/4.2/Resources/library), and then delete sceptre via rm -rf sceptre. After this, try downloading the package again.

redbybeing commented 1 year ago

Thank you! The function is available after erasing and re-installing sceptre as you mentioned!

timothy-barry commented 1 year ago

Great, closing.