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Katsevich-Lab / sceptre

An R package for single-cell CRISPR screen data analysis emphasizing statistical rigor, massive scalability, and ease of use.
https://katsevich-lab.github.io/sceptre/
GNU General Public License v3.0
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Dev #69

Closed timothy-barry closed 11 months ago

timothy-barry commented 11 months ago

Four updates.

  1. Add an n_processors argument to the functions that enable parallelization to allow users to select the number of processors to use. (The default, n_processors = "auto", selects the number of processors to use based on the number of processors available on the machine.)
  2. Add a log_dir argument enabling users to specify the directory in which to write the log files.
  3. Accelerate the plot_assign_grnas function.
  4. Fix the functionality for identifying mitochondrial genes; now, genes prefixed by "MT-" or "mt-" are considered mitochondrial.