KechrisLab MSPrep issues

KechrisLab / MSPrep

A processing pipeline for the summarization, normalization and diagnostics of mass spectrometry–based metabolomics data.

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MSPrep

#30 jsuh-denali opened 2 years ago
0
Feature BIOC

#29 max-mcgrath closed 4 years ago
0
add self as author to DESCRIPTION

#28 DanielMedic closed 4 years ago
0
ms_normalize parameter documentation

#27 DanielMedic closed 4 years ago
0
BPCA parameters in ms_impute

#26 DanielMedic closed 4 years ago
0
What if a user does not have replicates, spike-ins or batches?

#25 DanielMedic closed 4 years ago
0
choice of making metabolites or samples neighbors

#24 DanielMedic closed 4 years ago
0
Output of vignette.

#23 tuh8888 closed 4 years ago
1
Update of Vignette and Documentation

#22 tuh8888 closed 5 years ago
1
Fix print method

#21 mmulvahill closed 4 years ago
1
Clean up repo

#20 mmulvahill closed 4 years ago
0
Diagnostic and visualization functions

#19 mmulvahill opened 5 years ago
0
Consider changing groupingvars to sample_info and check handling of continuous variables.

#18 mmulvahill closed 4 years ago
0
A few changes to make the examples run

#17 tuh8888 closed 5 years ago
1
Notes

#16 mmulvahill closed 5 years ago
1
Clarify RT variable type

#15 mmulvahill closed 5 years ago
1
Imputation questions

#14 mmulvahill closed 6 years ago
3
Track already-completed processes & valid combinations in MSPrep object

#13 mmulvahill closed 5 years ago
1
Review this -- programming w/ dplyr

#12 mmulvahill closed 5 years ago
1
Meeting 1/9/18

#11 mmulvahill closed 5 years ago
2
Incorporate Dominik's notes into existing issues

#10 mmulvahill closed 5 years ago
1
Add new modular methods

#9 mmulvahill closed 5 years ago
1
Ordering should be...

#8 mmulvahill closed 5 years ago
1
Data transformed yes/no

#7 mmulvahill closed 4 years ago
1
Modulerize functions

#6 mmulvahill closed 5 years ago
1
Improve user interface/reading in data - streamline/simplify

#5 mmulvahill closed 5 years ago
1
Remove hard-coding of replicate count (curr = 3)

#4 mmulvahill closed 5 years ago
1
Add documentation to functions, datasets, and add vignette

#3 mmulvahill closed 4 years ago
4
Consolidate different versions of code

#2 mmulvahill closed 5 years ago
4
Metabolomics and mass spec resources for Bioconductor incorporation

#1 mmulvahill closed 5 years ago
3