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KechrisLab / multiMiR

Development repository for the multiMiR database's R API
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Error with loading multiMiR #40

Closed Pradipti-13 closed 3 years ago

Pradipti-13 commented 3 years ago

I am getting this error when trying to run multiMiR.

Error in load(url.file) : cannot open the connection to 'http://multimir.org/multimir_cutoffs_2.3.rda' In addition: Warning message: In load(url.file) : URL 'http://multimir.org/multimir_cutoffs_2.3.rda': status was 'Couldn't connect to server'

When I restarted RStudio and ran library(multiMiR), the following is the error that popped up.

Error: package or namespace load failed for ‘multiMiR’: .onLoad failed in loadNamespace() for 'multiMiR', details: call: function (type, msg, asError = TRUE) error: Failed to connect to multimir.org port 80: Connection refused

It would be so kind of you to help me out.

smahaffey commented 3 years ago

@Pradipti-13 I'm very sorry for the inconvenience. It is working now. The same issue that happened before happened again after patching and rebooting the server yesterday. I will investigate the issue to prevent this or at least make sure it is working after a reboot in the future if I can't figure out why this is happening. Thank you so much for reporting the issue and your patience.

Further detail on the issue: We use an EC2 instance to host this web server and the files for the multimir service are on an EBS volume that is not the boot volume. Apparently something has changed in the last 2-3 months that this secondary EBS volume is not mounted by the time the web server starts and it fails. This is the second time this has happened. I will find a way to prevent this.

Pradipti-13 commented 3 years ago

No issues Spencer. Thank you so much for fixing it!

On Wed, Aug 18, 2021 at 6:38 PM Spencer Mahaffey @.***> wrote:

@Pradipti-13 https://github.com/Pradipti-13 I'm very sorry for the inconvenience. It is working now. The same issue that happened before happened again after patching and rebooting the server yesterday. I will investigate the issue to prevent this or at least make sure it is working after a reboot in the future if I can't figure out why this is happening. Thank you so much for reporting the issue and your patience.

Further detail on the issue: We use an EC2 instance to host this web server and the files for the multimir service are on an EBS volume that is not the boot volume. Apparently something has changed in the last 2-3 months that this secondary EBS volume is not mounted by the time the web server starts and it fails. This is the second time this has happened. I will find a way to prevent this.

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-- Thanks and Regards, Pradipti Thakur UG Third-year Department of Biotechnology Indian Institute of Technology Kharagpur Contact No: +91 758402999 Facebook https://www.facebook.com/pradipti.thakur.507 || LinkedIn https://www.linkedin.com/in/pradipti-thakur-3990a9172/