Can't load library(multiMiR)

KechrisLab / multiMiR

Development repository for the multiMiR database's R API

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Can't load library(multiMiR) #56

Open wuds2006 opened 1 month ago

wuds2006 commented 1 month ago

library(multiMiR) Error: package or namespace load failed for ‘multiMiR’: .onLoad failed in loadNamespace() for 'multiMiR', details: call: function (type, msg, asError = TRUE) error: Recv failure: Connection was reset R:4.4.1 Rtools:4.4 China

wuds2006 commented 1 month ago

example1 <- get_multimir(org = "mmu",

mirna = 'mmu-miR-709',
table = "validated",
summary = TRUE) Searching mirecords ... Error in map(): ℹ In index: 1. ℹ With name: mirecords. Caused by error: ! Recv failure: Connection was reset Run rlang::last_trace() to see where the error occurred.

smahaffey commented 1 month ago

@wuds2006 In the next version(v1.27.2) which will be available in BioConductor 3.20 I extended the connection timeout that I suspect causes the connection reset issues. Do you mind to try the new version? If not update to BioConductor 3.20 when it's released later this month.

Alternatively you could try to extend the timeout. I have not tested this, but running options(timeout = 180) Should extend the timeout for the multiMiR connection. You can increase the value further if needed.