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Kennedy-Lab-UW
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Duplex-Seq-Pipeline
A standalone end-to-end data analysis pipeline for Duplex Sequencing
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different coverage between dcs.depth.txt and dcs.vcf
#116
shenhaizhongdechanrao
opened
1 month ago
0
Bkohrn patch 2.1.5
#115
bkohrn
closed
1 year ago
0
Make cutadapt multicore
#114
bkohrn
closed
1 year ago
0
Bkohrn patch v2.1.4
#113
bkohrn
closed
1 year ago
0
Fix gene sums in mutFreqFromVCF
#112
bkohrn
closed
1 year ago
0
Variants in VCF aren't always used in calculating mutation frequencies
#111
scottrk
closed
1 year ago
0
Some java steps sometimes run out of memory
#110
bkohrn
opened
1 year ago
0
Missing input files for rule makeConsensus
#109
guopengliu1993
closed
1 year ago
3
Some types of ambiguous reads lacking further taxon codes
#108
bkohrn
opened
1 year ago
3
Question about the locLen
#107
JulienSLopez
closed
1 year ago
6
Update python env, and other changes.
#106
bkohrn
closed
2 years ago
0
Move VCF filtering
#105
bkohrn
closed
2 years ago
0
Dev
#104
bkohrn
closed
3 years ago
0
patch sample checking
#103
bkohrn
closed
3 years ago
0
Bkohrn patch sample checking 2
#102
bkohrn
closed
3 years ago
0
Bkohrn patch sample checking
#101
bkohrn
closed
3 years ago
0
Update DS_baseSchema.yaml
#100
bkohrn
opened
3 years ago
0
Error in makeSummaryDepth with large capture sets
#99
bkohrn
closed
1 year ago
0
Questions for the adapterSeq parameter
#98
weiwsmiling
opened
3 years ago
2
Fix bug with re-organization
#97
bkohrn
closed
3 years ago
0
Implement consensus_caller speedup
#96
bkohrn
closed
3 years ago
0
Scheduler errors on Mac OS X Sierra
#95
bkohrn
opened
3 years ago
2
Rerun type 1 does not work as expected
#94
bkohrn
closed
3 years ago
1
patch v2.1.2
#93
bkohrn
closed
3 years ago
5
Patch v2.1.1 (#91)
#92
bkohrn
closed
3 years ago
0
Patch v2.1.1
#91
bkohrn
closed
3 years ago
0
v2.1.1_release_merge
#90
bkohrn
closed
3 years ago
0
Release merge for v2.1.0
#89
bkohrn
closed
3 years ago
0
v2.0.1 bugfix
#88
bkohrn
closed
3 years ago
0
V2.0.0 prerelease merge-back to dev
#87
bkohrn
closed
3 years ago
0
V2.0.0 pre fix blast
#86
bkohrn
closed
3 years ago
0
1.x.x release
#85
bkohrn
closed
3 years ago
0
Update Changelog
#84
bkohrn
closed
3 years ago
0
1.x.x release
#83
bkohrn
closed
3 years ago
0
BugFix: Non_unique countmuts
#82
bkohrn
closed
3 years ago
0
1.x.x dev
#81
bkohrn
closed
3 years ago
0
Update CHANGELOG
#80
bkohrn
closed
3 years ago
0
Update CHANGELOG
#79
bkohrn
closed
3 years ago
0
1.x.x dev -> 1.x.x release for v1.1.5
#78
bkohrn
closed
4 years ago
0
v1.1.5 update to 1.x.x_dev branch
#77
bkohrn
closed
4 years ago
0
Fix bug on line 375 with 0-position starts in bed files
#76
bkohrn
closed
4 years ago
0
V2.0.0 prerelease
#75
bkohrn
closed
3 years ago
0
Update documentation and changelog
#74
bkohrn
closed
4 years ago
0
Set quality of N bases from consensusMaker to 0
#73
bkohrn
closed
4 years ago
0
Rebase merge for add_adapter_clipping for testing purposes
#72
bkohrn
closed
4 years ago
0
Add adapter clipping
#71
bkohrn
closed
4 years ago
0
Update dev_mutsPerCycle_inclExc
#70
bkohrn
closed
4 years ago
0
Add additional functionality to mutPerCycle
#69
bkohrn
closed
4 years ago
1
Bkohrn nbconvert patch 1.x.x --> 1.x.x_dev
#68
bkohrn
closed
4 years ago
0
Bkohrn nbconvert patch 1.x.x --> 1.X.X_release
#67
bkohrn
closed
4 years ago
0
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