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KevinMenden
/
scaden
Deep Learning based cell composition analysis with Scaden.
https://scaden.readthedocs.io
MIT License
71
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26
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How to repeat the experiments in your paper
#77
hathawayxxh
closed
3 years ago
19
Order of genes in prediction data
#76
amjass12
closed
3 years ago
2
Availability of sc-rnaseq data
#75
Klopfe
closed
3 years ago
1
Error when running simulate
#74
RK1912
closed
3 years ago
17
Normalization of the training expression data
#73
HelloYiHan
closed
3 years ago
3
"scaden example --out example_data/" doesn't work
#72
bioinfouser
closed
3 years ago
1
Automatic cell type labeling for easier data preparation
#69
KevinMenden
opened
3 years ago
0
Memory footprint too big for simulation of large datasets
#68
KevinMenden
closed
3 years ago
0
made dataset identification more robust
#67
KevinMenden
closed
3 years ago
0
Dataset recognition is not robust
#66
KevinMenden
closed
3 years ago
1
Scaden test
#65
Zhaohui-Ruan
closed
3 years ago
1
About scaden simulate
#64
Zhaohui-Ruan
closed
3 years ago
2
Data Scaden required
#63
Zhaohui-Ruan
closed
3 years ago
9
Error: fail to generate example data by using scaden expample
#62
Zhaohui-Ruan
closed
3 years ago
3
Version v1.0.0 release
#61
KevinMenden
closed
3 years ago
0
Problems with pattern finding in 'scaden simulate'
#60
KevinMenden
closed
3 years ago
1
simulate and preprocess
#59
vdet
closed
3 years ago
2
mouse_brain.h5ad file
#58
yunners
closed
3 years ago
1
Update the documentation
#57
KevinMenden
closed
3 years ago
0
added GPU container building to action
#56
KevinMenden
closed
3 years ago
0
Configure GitHub actions to build docker images for CPU and GPU usage
#55
KevinMenden
closed
3 years ago
1
fixed version badge
#54
KevinMenden
closed
3 years ago
0
Release 0.9.6
#53
KevinMenden
closed
3 years ago
0
Scaden simulate error: KeyError: 'Celltype'
#52
MarcusLCC
closed
3 years ago
6
No 'simulate' command in docker image? And doc for h5da file content
#51
vdet
closed
3 years ago
6
Implement testing via GitHub actions
#50
KevinMenden
closed
3 years ago
2
Version 0.9.5
#49
KevinMenden
closed
3 years ago
0
Make Scaden runs reproducible
#48
KevinMenden
closed
3 years ago
1
Merge pull request #46 from KevinMenden/dev
#47
KevinMenden
closed
3 years ago
0
Syn Dev an Master branchs
#46
KevinMenden
closed
3 years ago
0
Refactor with TF 2.0
#45
KevinMenden
closed
3 years ago
0
Add lint function to inspect input files
#44
KevinMenden
closed
3 years ago
1
PBMC2 (monaco) dataset in pbmc_data.h5ad
#43
mjjeon
closed
3 years ago
4
issues with the webtool
#42
liu-ying-jun
closed
3 years ago
5
Replace deprecated as_matrix() with to_numpy()
#41
zeehio
closed
3 years ago
0
deprecated `as_matrix` in create_h5ad_file.py
#40
lucapandolfini
closed
3 years ago
0
Problem with Scaden process
#39
idalarsson
closed
3 years ago
3
Problem creating h5ad-file
#38
idalarsson
closed
3 years ago
8
Is L1 loss function correct?
#37
OnlyBelter
closed
3 years ago
2
Bulk generation
#36
idalarsson
closed
3 years ago
8
Recommended #s for cells and # of samples
#35
rdchow
closed
3 years ago
2
Normalization of input bulk data
#34
Tushar-87
closed
4 years ago
1
predicting bulk RNA-seq
#33
Joliver3991
closed
4 years ago
2
Consider adding the demo website?
#32
zeehio
closed
4 years ago
2
Add script for Dockerfile auto-builds
#31
zeehio
closed
4 years ago
2
tensorflow vs tensorflow-gpu
#30
zeehio
closed
4 years ago
3
Add installation instructions
#29
zeehio
closed
4 years ago
1
Fixed Dependency Problem - Version v0.9.4
#28
KevinMenden
closed
4 years ago
0
Use anndata instead of scanpy
#27
zeehio
closed
4 years ago
0
Dev
#26
KevinMenden
closed
4 years ago
0
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