KoesGroup Snakemake_ChIPseq_PE issues

KoesGroup / Snakemake_ChIPseq_PE

Pipeline for the analysis of PE ChIP-seq data

Creative Commons Attribution Share Alike 4.0 International

14 stars 4 forks source link

issues

Newest

Newest Most commented Recently updated Oldest Least commented Least recently updated

To integrate the required files for submission into master

#31 mgalland closed 5 years ago
0
Release v1.0 merged to master

#30 JihedC closed 5 years ago
0
Write a publication in the "The Journal of Open Source Software"

#29 mgalland opened 5 years ago
3
Prepare the release 1.0 by merging the develop branch

#28 JihedC closed 5 years ago
1
Implement genome visualization of the data in the pipeline

#27 JihedC opened 5 years ago
2
Add a DAG of the pipeline in the README

#26 JihedC closed 5 years ago
2
Deeptools to develop

#25 JihedC closed 5 years ago
3
Handle GTF or GFF formats

#24 mgalland opened 5 years ago
0
HPC Cluster execution

#23 mgalland opened 5 years ago
0
Deeptools post-processing

#22 JihedC closed 5 years ago
1
Move the definitions of the group for deep tools to the configuration file

#21 JihedC closed 5 years ago
0
Make a documentation for deeptools

#20 JihedC closed 5 years ago
1
Added singularity image to the pipeline

#19 mgalland closed 5 years ago
11
Implement multiQC

#18 JihedC opened 6 years ago
1
To integrate changes made in release into the develop branch

#17 mgalland closed 6 years ago
2
Deeptools : Correlation plot

#16 JihedC closed 6 years ago
1
Single end

#15 mgalland closed 5 years ago
4
Add protected and temporary to the relevant outputs

#14 JihedC closed 6 years ago
2
Some logs are incomplete

#13 JihedC closed 6 years ago
2
Mistake

#12 JihedC closed 6 years ago
2
test

#11 JihedC closed 6 years ago
1
Create one .yaml environment file per rule

#10 mgalland closed 6 years ago
3
Use all treatment and control

#9 JihedC closed 6 years ago
3
order in the rules

#8 JihedC closed 6 years ago
6
Merge bed branch to develop branch

#7 JihedC closed 6 years ago
7
Implement singularity

#6 mgalland closed 5 years ago
2
Bigwig merge with develop branch

#5 JihedC closed 6 years ago
4
bedgraph -bga

#4 mgalland closed 6 years ago
2
add rule generating bedgraph files

#3 JihedC closed 6 years ago
0
Add rules rmdup and bam_index, working version

#2 JihedC closed 6 years ago
3
Fastqc

#1 JihedC closed 6 years ago
4