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KosinskiLab
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AlphaPulldown
https://doi.org/10.1093/bioinformatics/btac749
GNU General Public License v3.0
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Update alphalink backend
#345
dingquanyu
closed
4 months ago
0
singularity error
#344
polya18
closed
3 months ago
21
Replace this with non-cctbx solution
#343
jkosinski
closed
3 months ago
7
run_multimer_jobs issue
#342
J-Held
closed
4 months ago
5
Running calculate_mpdockq.py with only PDB
#341
busrasavas
closed
4 months ago
1
Add dropout
#340
jkosinski
opened
4 months ago
0
GPU not working when run_multimer_jobs.py
#339
polya18
opened
4 months ago
3
Update documentation request
#338
Clockris
closed
1 month ago
2
Too many proteins in one interaction ?
#337
Qrouger
opened
4 months ago
2
Add generation of JSON for AlphaFold server
#336
jkosinski
opened
4 months ago
0
using several GPUs on a single workstation
#334
errinaceus
opened
4 months ago
1
Improve pdb_analyser.py
#333
DimaMolod
closed
3 months ago
2
Make it possible to run create_individual_features.py with multimeric tempaltes using mmseqs2
#332
DimaMolod
opened
4 months ago
1
Fix interface measurements in the analysis pipeline
#330
dingquanyu
closed
4 months ago
3
pi-score outputs
#329
salomonssonj
closed
4 months ago
7
Multiple mmts
#328
DimaMolod
closed
4 months ago
3
Fix 292 and singularity image
#327
dingquanyu
closed
5 months ago
0
alphapulldown.utils.process_files automatically excludes permutation of the input elements
#324
maurerv
closed
5 months ago
1
predictions_with_good_interpae.csv
#323
DimaMolod
closed
5 months ago
0
Different behavior of the all_vs_all mode in AlphaPulldown 2.0.0 beta v2?
#322
TM-Hamm
closed
5 months ago
9
update tests and fixed create_notebook
#321
dingquanyu
closed
5 months ago
0
Flash attention?
#320
jkosinski
opened
5 months ago
0
operands could not be broadcast together with shapes - MMSEQ2
#319
rukibuki
closed
1 month ago
2
Update tests
#318
dingquanyu
closed
5 months ago
0
Snakemake docker
#317
DimaMolod
closed
5 months ago
0
Path output alpha-analysis.sif
#316
JtheBAB
opened
5 months ago
3
added distogram parser - no tests so far as the pkl files may be too …
#315
gchojnowski
closed
1 month ago
0
Version2
#313
DimaMolod
closed
5 months ago
9
Version2 beta v1 issues
#312
dingquanyu
closed
4 months ago
0
Add interface PAE and plddt calculation to anlaysis pipeline
#311
dingquanyu
closed
5 months ago
4
database setup - HHblits reference
#310
WardDeb
closed
5 months ago
2
rebase openfold branch
#309
dingquanyu
closed
5 months ago
0
Manuals 2.0 beta
#308
dingquanyu
closed
3 months ago
5
Fix292, update analysis pipeline singularity files
#307
dingquanyu
closed
5 months ago
0
Update alphafold_backend.py
#306
DimaMolod
closed
5 months ago
0
Fix padding
#305
dingquanyu
closed
5 months ago
0
fixed an issue in af2-like coloring by plddt
#304
gchojnowski
closed
5 months ago
0
Backend revision
#303
dingquanyu
closed
5 months ago
6
merge updates on indents and function cleaning
#301
dingquanyu
closed
6 months ago
0
Merge Dima patches to jit-jobs first
#300
dingquanyu
closed
6 months ago
0
Pad input features from different prediction jobs to a universal desired shapes
#299
dingquanyu
closed
6 months ago
4
Update setup.cfg: setting tensorflow>=2.14.0 leads to incompatible cuda
#298
kashyapchhatbar
closed
5 months ago
1
Reopening PR
#297
DimaMolod
closed
6 months ago
3
Setting tensorflow>=2.14.0 leads to incompatible cuda
#296
kashyapchhatbar
closed
5 months ago
1
Revert "Dima small patches"
#295
dingquanyu
closed
6 months ago
0
num_predictions_per_model
#294
hqdream
closed
6 months ago
3
How to run with reduced_dbs
#293
fteufel
opened
6 months ago
2
KeyError: 'template_confidence_scores'
#292
Qrouger
closed
5 months ago
13
Dima small patches
#291
DimaMolod
closed
6 months ago
7
alpha-analysis.sif can not process larger models
#290
teaninja
closed
3 weeks ago
5
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